Table 1.

Summary of linkage disequilibrium (LD) and single nucleotide polymorphisms (SNPs) used to estimate LD.

Chromosome	No. SNPs in 69 genotypes1	No. SNPs in 68 genotypes2	No. SNP used to estimated LD	Mean r2	LD decay (kb)
Ca1	110,295	69,424	3,386	0.18	2,000
Ca2	75,410	40,404	2,667	0.10	1,500
Ca3	105,954	42,213	1,444	0.15	4,800
Ca4	170,747	118,778	4,092	0.28	23,000
Ca5	112,194	46,770	1,457	0.07	1,000
Ca6	130,732	68,481	2,276	0.10	2,500
Ca7	93,455	44,933	2,316	0.16	5,200
Ca8	28,624	13,356	267	0.08	500
Total/average	827,411	444,359	17,905	0.14	5,062

¹68 Cicer arietinum plus one Cicer reticulatum

²68 Cicer arietinum