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. 2017 Mar 14;112(5):868–880. doi: 10.1016/j.bpj.2017.01.011

Table 2.

Derived Parameters for Increasing kn from Least-Squares Fitting to Eq. 2, and from ODE/ABC Analysis

Derived Parameter Base kn × 2 kn × 5 kn × 10
N-E-F log(kn/k) −2.43 ± 0.02 −2.15 ± 0.02 −1.78 ± 0.01 −1.49 ± 0.01
log(k+k) −9.104 ± 0.006 −9.108 ± 0.006 −9.116 ± 0.006 −9.127 ± 0.006
ODE log(kn/kf) −3.09 ± 0.03 [−3.00] −2.78 ± 0.03 [−2.70] −2.59 ± 0.05 [−2.30] −2.06 ± 0.02 [−2.00]
log(ke1kf) −8.98 ± 0.01 [−9.00] −8.98 ± 0.01 [−9.00] −8.91 ± 0.02 [−9.00] −8.97 ± 0.01 [−9.00]
log(ke2kf) −8.98 ± 0.01 [−9.00] −8.98 ± 0.01 [−9.00] −8.91 ± 0.02 [−9.00] −8.98 ± 0.01 [−9.00]
log(ke1kn) −12.07 ± 0.02 [−12.00] −11.76 ± 0.02 [−11.70] −11.50 ± 0.03 [−11.30] −11.04 ± 0.01 [−11.00]
log(ke2kn) −12.07 ± 0.02 [−12.00] −11.76 ± 0.02 [−11.70] −11.50 ± 0.03 [−11.30] −11.04 ± 0.01 [−11.00]
log(ke1/ke2) −0.0003 ± 0.002 [0] −0.001 ± 0.001 [0] −0.002 ± 0.002 [0] 0.001 ± 0.001 [0]

Reported errors indicate standard errors of fitting for N-E-F parameters, and mean ± SE of the derived parameter posterior distributions for ODE (n = 100). Also for ODE, italicized values in brackets indicate the expected value of the derived parameter used to generate a synthetic timecourse.