Table 1. Putative Rex target genes.
| Gene | Function | Nucleotide positiona | PMW Scoreb | Sequence | ATG Distancec | |
|---|---|---|---|---|---|---|
| Start | End | |||||
| cydA1B1CD (SAV4260-4258) | putative cytochrome bd-I oxidase (cytochrome bd complex) | 5226395 | 5226412 | 1.00 | ATGTGAACGCGTTCACAA | 81 |
| rex-hemAC1DB (SAV4738-4742) | redox-sensing transcriptional repressor; heme biosynthetic enzymes | 5776959 | 5776976 | 1.00 | TTGTGCACGCGTTCACAA | 77 |
| atpIBEFHAGDC (SAV2888-2880) | putative F-type proton-transporting ATPase | 3533332 | 3533349 | 2.00 | TTGTGATACGGTTCACGA | 137 |
| wblE (SAV3016) | putative WhiB-family transcriptional regulator | 3771378 | 3771395 | 2.00 | ATGTGAACGCTTTCACGA | 43 |
| hppA (SAV4616) | putative inorganic H+ pyrophosphatase | 5632612 | 5632629 | 2.00 | TCGTGAATCAATTCACGA | 195 |
| nuoA1-N1 (SAV4837–4850) | putative NADH dehydrogenase I (complex I) | 5880239 | 5880256 | 2.00 | ATGTGAAGCAGGTCACAA | 147 |
| pbp3-4 (SAV3603-SAV3604) | putative penicillin-binding protein | 4460250 | 4460267 | 2.00 | TTCTGAACGTGTTCAGAA | 37 |
| SAV828 | putative rhamnosidase | 982811 | 982828 | 3.00 | CTGTGAATCGATTCACCT | 137 |
| echA7 (SAV2316) | putative enoyl-CoA hydratase | 2820643 | 2820660 | 3.00 | TCGTGACGACAGTCACAA | 66 |
| SAV2652 | putative regulatory protein | 3252402 | 3252419 | 3.00 | TTGTGCACCGCTTCACCC | 288 |
| ndh2 (SAV3529) | putative NADH dehydrogenase (complex I) | 4369478 | 4369495 | 3.00 | TTGTGAAGGGGCGCACGA | 119 |
| ectABCD (SAV6398-6395) | putative L-2,4-diaminobutyrate acetyltransferase, ectoine biosynthesis | 7673586 | 7673603 | 3.00 | TTGTGATCGACTCCACAT | 155 |
| SAV6368 | putative multiple sugar ABC transporter permease protein | 7638483 | 7638500 | 3.00 | TGGTGAAGCGCTTCGCGT | 81 |
| avaB- avaL2 (SAV2267-2268) | putative gamma-butyrolactone- dependent transcriptional regulator | 2766273 | 2766290 | 3.00 | TCGTGAACGAATTCTAAT | 29 |
| SAV3213 | putative nitroreductase family protein, NADH dehydrogenase/NAD(P)H nitroreductase | 4004553 | 4004570 | 3.00 | TGGTGATCGGCTTCACAG | 96 |
| SAV1351 | putative fatty acid-CoA racemase | 2820643 | 2820660 | 3.00 | TCGTGACGACAGTCACAA | 66 |
| tmk (SAV4622) | putative thymidylate kinase | 5643744 | 5643761 | 3.00 | GTGTGGAGGCGTCCACAA | 73 |
| folD2 (SAV543) | putative methylenetetrahydrofolate | 688370 | 688387 | 3.00 | TTGTGTGTGAGTTCAGAA | 231 |
| parA (SAV6508) | putative partitioning or sporulation protein | 7797460 | 7797477 | 3.00 | ATGTCGACTCATTCACAA | 114 |
| SAV7415-7416 | putative sugar isomerase putative simple sugar ABC transporter | 8846427 | 8846444 | 3.00 | TCGTGAAAGGTTTCAACT | 203 |
| SAV897 | putative alpha-amylase inhibitor | 1075479 | 1075496 | 3.00 | TTGCGAAAGTTGTCGCAA | 73 |
aGenomic position.
bNumber of mismatches with respect to the consensus. PWM, positive weight matrix.
cValues are distances (in nucleotides) to the predicted start codon of the downstream gene.