TABLE 1.
Summary of results
| Isolate | Species | Genome size (bp) | Accession no. | Motif in genomea | Methylation type(s) | Assigned methylase(s) |
|---|---|---|---|---|---|---|
| U13-1 | Exiguobacterium sp. | 3,208,635 | CP015731 | CGGCSBYRb | m5C type II | NDc |
| CGCCGVNYb | m5C type II | ND | ||||
| U17-1 | Bacillus safensis | 3,741,806 | CP015611 | ND | ND | ND |
| U14-5 | B. safensis | 4,070,483 | CP015607 | CCWGG | m5C type II | M.Bsa145I |
| 58,536 | CP015608 | |||||
| 22,301 | CP015609 | |||||
| Roseomonas gilardi | 4,328,147 | CP015583 | GAACN7TCGC, GANTC | m6A type I, m6A type II | S.Rgi145I, M.Rgi145II | |
| 702,334 | CP015584 | |||||
| 265,182 | CP015585 | |||||
| 64,339 | CP015586 | |||||
| 52,461 | CP015587 | |||||
| U41 | B. safensis | 3,735,180 | CP015610 | ND | ND | ND |
| Arthrobacter sp. | 4,386,370 | CP015732 | TTAA | m6A type II | M.AspU41I | |
| 178,576 | CP015733 | GGCAN6TGA | m6A type I | S.AspU41III | ||
| 166,446 | CP015734 | GGATCC | m6A type II | M.AspU41ORF21335P | ||
| 61,247 | CP015735 | CCWGG | m5C type I | M.AspU41II |
a
Modified bases are highlighted in bold.
b
The m5C motif cannot be deduced unambiguously by the PacBio software. The motifs are unlikely to be correct as called.
c
ND, no motif detected, although the same m5C methylase gene is present in both strains.