Table 4.

Results of the gene based analysis run in the Swedish schizophrenia case-control sample (N = 11,040). The gene-based analysis was conducted by relying on the data-driven weighting procedure, without imposing a-priori a frequency threshold. Bonferroni corrected p-values are given in italics.

Chromosome (position range)	Gene (autosome variants)	weights dbeta	LRT	Score test
6 (31584304–31607461)	PRRC2A (408)	(1,1)	1.020E-06 (0.0043)	2.556E-06 (0.011)
		(.5,.5)	5.8E-04 (1)	9.886E-05 (0.4255)
		(1,25)	0.055 (1)	0.057 (1)
6 (30877202–30894026)	VARS2 (238)	(1,1)	2.383E-06 (0.0102)	0.0043 (1)
		(.5,.5)	0.0031 (1)	0.0048 (1)
		(1,25)	1 (1)	0.534 (1)
1 (243668558–244006487)	AKT3 (43)	(1,1)	2.825E-05 (0.1216)	7E-04 (0.7533)
		(.5,.5)	0.0036 (1)	0.0063 (1)
		(1,25)	1.6E-04 (0.6888)	7.586E-05 (0.3265)