Table 2.
Differentially expressed ncRNAs
| Gene_name | Gene_type | NPC_binding | Log2FC | Padj |
|---|---|---|---|---|
| DLX6-AS1 | antisense | 0 | 5.34E + 00 | 3.85E-86 |
| EMX2OS | antisense | 0 | 1.10E + 00 | 3.79E-02 |
| LINC00340 | lincRNA | 1 | −7.78E-01 | 1.54E-04 |
| TERC | lincRNA | 0 | −1.07E + 00 | 1.18E-03 |
| CRNDE | lincRNA | 1 | −9.63E-01 | 1.39E-02 |
| MEG3 | lincRNA | 1 | −1.24E + 00 | 1.39E-02 |
| RMST | processed_transcript | 0 | −1.23E + 00 | 6.41E-07 |
| MIAT | processed_transcript | 1 | −1.28E + 00 | 6.10E-06 |
| NEFL | processed_transcript | 0 | −1.18E + 00 | 2.08E-04 |
| TMEM191A | processed_transcript | 0 | −7.74E-01 | 1.33E-02 |
| SPPL2B | processed_transcript | 1 | −6.41E-01 | 2.32E-02 |
| SCARNA22 | sense_intronic | 0 | −1.31E + 00 | 1.56E-03 |
| SNHG3 | sense_intronic | 1 | −7.94E-01 | 1.41E-02 |
| SOX2-OT | sense_overlapping | 1 | 9.29E-01 | 9.81E-04 |
| SNORA31 | snoRNA | 0 | −1.03E + 00 | 2.41E-02 |
| SNORA7B | snoRNA | 1 | −1.03E + 00 | 3.30E-02 |
| SCARNA13 | snoRNA | 0 | −7.08E-01 | 3.77E-02 |
| SNORA73B | snoRNA | 1 | −7.89E-01 | 4.61E-02 |
| RNU2-59P | snRNA | 0 | −9.94E-01 | 1.76E-02 |
| RNU6-15P | snRNA | 0 | −1.07E + 00 | 4.99E-02 |
FC is fold change: CHD8 +/−/CHD8 ++. Padj is adjusted p value. CHD8 binding based on ChIP-seq in NPCs by Sugathan et al. [42]