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. 2016 Oct 21;2(10):e000088. doi: 10.1099/mgen.0.000088

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© 2016 The Authors

This is an open access article under the terms of the Creative Commons Attribution 4.0 International License, which permits unrestricted use, distribution and reproduction in any medium, provided the original author and source are credited.

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Fig. 1. — (a) Phylogram of RAxML tree based on non-recombined core genome. Semicircles from outside to inside represent genetic features listed in the legends. Branches are colored according to hierBAPS clustering. The two major clades (a and b) are indicated. (b) Inner phylogram: RAxML-tree as described for Fig. 1(a). Outer phylogram: RAxML-tree based on a binary matrix of presence–absence of accessory genes. Nodes with bootstrap values >50 % are indicated with a circle. Semicircles from outside to inside: ST, year and country of origin (see legends for indications). Branches are colored according to hierBAPS clustering.