Table 2.
Allele frequencies before treatment for T. circumcincta SNPs 167 and 198/200, and T. colubriformis SNP 198/200, and morphological identification
| Farm | T. colubriformis | T. circumcincta | % L3 species | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| % SNP200 | % SNP198 | % SNP200 | % SNP198 | % SNP167 | Tc | Tri | Hc | Bu | Ne | Ch | Co | |
| 1 | 0 | 2.5 | 0 | 0 | 0 | 51 | 42 | 4 | 1 | 2 | 0 | 0 |
| 2 | 51.6 | 6.8 | 0 | 0 | - | 49 | 47 | 3 | 0 | 1 | 0 | 0 |
| 3 | - | - | 3.4 | 0 | 0 | 52 | 45 | 2 | 0 | 0 | 0 | 1 |
| 4 | 0 | 3.3 | 0 | 0 | 2.6 | 43 | 41 | 2 | 12 | 1 | 2 | 0 |
| 5 | 0 | 0 | 0 | 0 | 2.8 | 55 | 42 | 2 | 0 | 0 | 0 | 0 |
| 6 | 3.1 | 0 | 0 | 0 | 2.8 | 48 | 38 | 0 | 1 | 0 | 13 | 0 |
| 7 | 2 | 2 | 0 | 2 | 3.1 | 46 | 43 | 0 | 3 | 0 | 8 | 0 |
| 8 | 87.8 | 3.9 | - | - | 0 | - | - | - | - | - | - | - |
| 9 | 0 | 3.1 | 0 | 0 | - | 54 | 46 | 0 | 0 | 0 | 0 | 0 |
| 10 | 48.5 | 0 | 0 | 0 | - | 53 | 46 | 0 | 1 | 0 | 0 | 0 |
Tc: T. circumcincta, Tri: Trichostrongylus spp, Hc: H. contortus, Bu: Bunostomun spp, Ne: Nematodirus spp, Ch: Chabertia ovina and Co: Cooperia oncophora. -: Failed samples