Table 3.
Gene ontology terms overrepresented in the “Shared Achimenes” orthogroups
| Term | Description | Type | FDR | Single-test p-value | Number in test group | Number in reference group |
|---|---|---|---|---|---|---|
| GO:0003676 | Nucleic acid binding | MF | 4.20e-46 | 2.30e-48 | 977 | 7373 |
| GO:0003677 | DNA binding | MF | 2.10e-44 | 2.30e-46 | 612 | 3951 |
| GO:0003682 | Chromatin binding | MF | 3.10e-28 | 6.80e-30 | 157 | 619 |
| GO:0044877 | Macromolecular complex binding | MF | 3.10e-28 | 6.80e-30 | 157 | 619 |
| GO:0003700 | Transcription factor activity, sequence-specific DNA binding | MF | 6.30e-20 | 2.00e-21 | 200 | 1112 |
| GO:0001071 | Nucleic acid binding transcription factor activity | MF | 6.30e-20 | 2.00e-21 | 200 | 1112 |
| GO:1901363 | Heterocyclic compound binding | MF | 2.70e-08 | 1.20e-09 | 1517 | 16173 |
| GO:0097159 | Organic cyclic compound binding | MF | 2.70e-08 | 1.20e-09 | 1517 | 16173 |
| GO:0005618 | Cell wall | CC | 3.10e-06 | 1.50e-07 | 43 | 199 |
| GO:0030312 | External encapsulating structure | CC | 4.50e-06 | 2.40e-07 | 43 | 203 |
| GO:0005488 | Binding | MF | 1.30e-04 | 8.00e-06 | 2737 | 31646 |
| GO:0090304 | Nucleic acid metabolic process | BP | 2.70e-04 | 1.90e-05 | 145 | 1210 |
| GO:0006259 | DNA metabolic process | BP | 2.70e-04 | 1.90e-05 | 145 | 1210 |
| GO:0030246 | Carbohydrate binding | MF | 2.10e-03 | 1.60e-04 | 63 | 456 |
| GO:0019825 | Oxygen binding | MF | 5.60e-03 | 4.60e-04 | 5 | 5 |
| GO:0071944 | Cell periphery | CC | 5.60e-03 | 4.90e-04 | 58 | 430 |
| GO:0009653 | Anatomical structure morphogenesis | BP | 7.00e-03 | 6.50e-04 | 7 | 14 |
| GO:0015979 | Photosynthesis | BP | 9.40e-03 | 9.20e-04 | 35 | 229 |
| GO:0006725 | Cellular aromatic compound metabolic process | BP | 1.90e-02 | 2.30e-03 | 590 | 6399 |
| GO:1901360 | Organic cyclic compound metabolic process | BP | 1.90e-02 | 2.30e-03 | 590 | 6399 |
| GO:0046483 | Heterocycle metabolic process | BP | 1.90e-02 | 2.30e-03 | 590 | 6399 |
| GO:0006139 | Nucleobase-containing compound metabolic process | BP | 1.90e-02 | 2.30e-03 | 590 | 6399 |
| GO:0005576 | Extracellular region | CC | 2.10e-02 | 2.60e-03 | 31 | 209 |
| GO:0005634 | Nucleus | CC | 2.80e-02 | 3.70e-03 | 236 | 2391 |
| GO:0009607 | Response to biotic stimulus | BP | 3.80e-02 | 5.20e-03 | 19 | 113 |
| GO:0005615 | Extracellular space | CC | 4.20e-02 | 6.20e-03 | 6 | 17 |
| GO:0044421 | Extracellular region part | CC | 4.20e-02 | 6.20e-03 | 6 | 17 |
Abbreviations: BP biological process, CC cellular component, FDR false discovery rate corrected p-value, MF molecular function