Table 2.

Human-associated strain specific genes^a [Reference genome: H37Rv (NC_000962)].

Gene	Synonym	Product length	COG	Annotation	RD No.
–	Rv0221	469	COG4908R	Diacyglycerol O-acyltransferase	RD10
echA1	Rv0222	262	COG1024I	Enoyl-CoA hydratase EchA1	RD10
PE_PGRS5	Rv0297	591	–	PE-PGRS family protein PE_PGRS5	/
PPE7	Rv0354c	141	–	PPE family protein PPE7	/
galTb	Rv0619	181	COG1085G	Galactose-1-phosphate uridylyltransferase GalTb	/
–	Rv1503c	182	COG0399M	TDP-4-oxo-6-deoxy-D-glucose aminotransferase	/
PE_PGRS31	Rv1768	618	COG5164	PE-PGRS family protein PE_PGRS31	RD14
yrbE3A	Rv1964	265	COG0767Q	Integral membrane protein	RD7
yrbE3B	Rv1965	271	COG0767Q	Integral membrane protein	RD7
mce3A	Rv1966	425	COG1463Q	Mce family protein Mce3A	RD7
mce3B	Rv1967	342	COG1463Q	Mce family protein Mce3B	RD7
mce3C	Rv1968	410	COG1463Q	Mce family protein Mce3C	RD7
mce3D	Rv1969	423	COG1463Q	Mce family protein Mce3D	RD7
lprM	Rv1970	377	COG1463Q	Mce family lipoprotein LprM	RD7
mce3F	Rv1971	437	COG1463Q	Mce family protein Mce3F	RD7
–	Rv1972	191	–	Mce associated membrane protein	RD7
–	Rv1973	160	–	Mce associated membrane protein	RD7
–	Rv1974	125	–	Membrane protein	RD7
–	Rv1975	221	COG2340S	Hypothetical protein	RD7
–	Rv1976c	135	–	Hypothetical protein	RD7
–	Rv1977	348	COG0501O	Hypothetical protein	RD7
–	Rv2073c	249	COG0300R	Oxidoreductase	RD9
–	Rv2074	137	–	Pyridoxamine 5'-phosphate oxidase	RD9
–	Rv2227	233	COG3826S	Hypothetical protein	/
echA18	Rv3374	82	COG1024I	Enoyl-CoA hydratase	/
ephA	Rv3617	322	COG0596R	Epoxide hydrolase EphA	RD8
–	Rv3618	395	COG2141C	Monooxygenase	RD8
PPE65	Rv3621c	413	COG5651N	PPE family protein PPE65	RD8
PE32	Rv3622c	99	–	PE family protein PE32	RD8

^aEight mce3 family genes, two enoyl-CoA hydratases and five PE/PPE family genes are highlighted as red, green, and blue letters.