Table 1. Summary of selection candidates identified by different methods during wheat domestication and improvement.

		Domestication			Total	Improvement				Total1	No. loci analyzed
		FST	lnRH	Freq		FST	lnRH	Freq	GWAS
	1A	141	29	92	150	38	16	42	138	58	1293
	2A	150	98	31	174	167	14	161	67	185	1197
	3A	129	17	101	137	81	18	78	172	100	1036
	4A	96	38	71	121	14	41	31	31	60	886
	5A	125	56	89	168	41	53	42	161	91	1328
	6A	146	138	38	199	1	15	2	285	17	1198
	7A	110	31	99	140	92	36	94	53	131	1370
	A sub-genome	897	407	521	1089	434	193	450	907	642	8308
	1B	163	55	84	177	18	356	19	460	377	2089
	2B	155	56	60	168	49	42	59	318	98	1779
	3B	91	20	52	96	18	64	22	79	86	1160
	4B	155	37	146	196	44	105	45	22	152	948
	5B	177	21	157	209	53	178	49	459	233	1691
	6B	89	46	33	108	79	25	68	64	102	1451
	7B	84	40	53	108	70	45	70	79	102	1307
	B sub-genome	914	275	585	1062	331	815	332	1481	1150	10425
	1D	58	28	36	75	0	15	0	20	15	575
	2D	77	42	50	106	4	163	4	15	167	863
	3D	62	17	48	78	8	16	5	17	24	393
	4D	13	14	21	35	1	21	1	5	22	173
	5D	39	91	55	147	0	9	0	8	9	680
	6D	27	23	17	50	3	6	2	45	9	306
	7D	38	128	51	182	7	5	7	9	12	810
	D sub-genome	314	343	278	673	23	235	19	119	258	3800
Total	Known positions	2125	1025	1384	2824	788	1243	801	2507	2050	22533
	Unknown positions	663	655	355	1187	209	465	234		647	11784
	All	2788	1680	1739	4011	997	1708	1035	2507	2697	34317

¹The number of selection candidates identified by F_ST, lnRH and Freq.