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. 2017 Mar 22;7:45113. doi: 10.1038/srep45113

Table 1. Fold change (logFC) of genes significantly down-regulated in both white genotypes F. vesca YW and HW4 compared to the red genotype RdV.

Gene_ID logFC SUM RdV SUM YW SUM HW4 Prediction Confirmed function
gene00395 −1.9 732 315 151 protein ZINC INDUCED FACILITATOR-LIKE 1-like (LOC101299619)  
gene01839 −1.9 10,330 3,811 2,475 probable cinnamyl alcohol dehydrogenase 1 (LOC101292655)  
gene04905 −3.7 98 50 2 receptor-like protein 12 (LOC101309371)  
gene05464 −7.8 45 2 0 uncharacterized sequence  
gene06602 −1.7 2,566 922 710 crocetin glucosyltransferase, chloroplastic-like (LOC101309923)  
gene07846 −4.2 35 47 0 pentatricopeptide repeat-containing protein At1g12300, mitochondrial-like (LOC101315323)  
gene08163 −5.0 58 30 0 uncharacterized sequence  
gene10142 −5.0 1,112 113 157 2-alkenal reductase NADP(+)-dependent-like (LOC101302097)  
gene12477 −6.1 20 0 0 12-oxophytodienoate reductase 3-like (LOC101293338)  
gene12565 −4.2 1,996 591 187 S-norcoclaurine synthase-like (LOC101292845)  
gene12591 −9.2 2,341 10 6 anthocyanidin 3-O-glucosyltransferase 2 (LOC101300000) GT127
gene12759 −3.4 310 370 3 putative F-box/LRR-repeat protein 23 (LOC101304436)  
gene12884 −4.0 394 4 95 dirigent protein 1-like (LOC101292468)  
gene13009 −4.3 76 12 3 F-box protein CPR30-like (LOC101302499)  
gene14611 −2.4 2,517 665 763 naringenin, 2-oxoglutarate 3-dioxygenase (LOC101300182) FHT6
gene15176 −3.6 715 307 133 bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase (DFR) (LOC101293459) DFR37
gene16103 −1.4 771 318 268 pyridoxal kinase (LOC101304704)  
gene16795 −4.7 58 53 0 uncharacterized sequence  
gene17181 −5.7 8 0 0 lysine histidine transporter-like 8 (LOC101292649)  
gene20261 −8.0 45 3 0 TMV resistance protein N-like (LOC101312392)  
gene21346 −2.2 1,209 729 319 probable chalcone--flavonone isomerase 3 (LOC101305307) CHI10
gene23269 −2.7 221 277 4 uncharacterized sequence  
gene24010 −4.6 54 7 10 uncharacterized sequence  
gene24179 −1.7 648 202 160 aspartic proteinase Asp1 (LOC101314219)  
gene25083 −4.9 33 1 8 12-oxophytodienoate reductase 2-like (LOC101297812)  
gene26826 −3.2 1,309 407 246 polyketide synthase 1 (LOC101298456) FvCHS2-235
gene27955 −4.9 69 6 1 receptor-like serine/threonine-protein kinase SD1-8 (LOC101306554)  
gene30678 −4.1 188 179 1 transmembrane protein 184 homolog DDB_G0279555-like (LOC105350765)  
gene31672 −7.2 678 17 1 glutathione S-transferase F11-like (LOC101294111)  
gene32347 −3.3 1,161 253 205 leucoanthocyanidin dioxygenase (LOC101308284) ANS6
gene32421 −3.0 642 92 88 protein P21-like (LOC101300343)  
gene32435 −2.5 551 198 92 short-chain dehydrogenase/reductase 2b-like (LOC101296098)  
gene33838 −1.4 291 188 57 AMP deaminase-like (LOC101301583)