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Population structure of CC398 S. aureus. The ML tree, reconstructed from 6654 core genome SNPs, illustrates the population structure of the representative global population of CC398 S. aureus. NZ, New Zealand; SA, South America; EE, Eastern Europe; WE, Western Europe; CN, China; UK, United Kingdom; HA-MRSA, human-associated MRSA; LA-MRSA, livestock-associated MRSA. The blue shading indicates the NZ CC398 MRSA sublineage, and grey shading/tips indicate NZ isolates.
