Table 2. Frequencies and statistical analysis of variant NEPH3-p.V353M in the various hematuric sub-cohorts, based on disease severity.
Genotype counts | Genotype frequency | Allele counts | Allele frequency | Statistics | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Cohort | N | VV | VM | MM | VV | VM | MM | V | M | V | M | “Mild” v. “Severe”a | “Mild” v. “Severe”b | Odds Ratio (Dominant model) |
General population | 462 | 437 | 25 | 0 | 0.946 | 0.054 | 0 | 899 | 25 | 0.973 | 0.027 | |||
ExAC Browser | 54373 | 52712 | 1595 | 61 | 0.969 | 0.029 | 0.002 | 105434 | 3312 | 0.969 | 0.031 | |||
Mild | ||||||||||||||
A | 44 | 44 | 0 | 0 | 1.0 | 0 | 0 | 88 | 0 | 1.0 | 0 | |||
B | 35 | 35 | 0 | 0 | 1.0 | 0 | 0 | 70 | 0 | 1.0 | 0 | |||
C | 22 | 22 | 0 | 0 | 1.0 | 0 | 0 | 44 | 0 | 1.0 | 0 | |||
D | 122 | 119 | 3 | 0 | 0.975 | 0.025 | 0 | 241 | 3 | 0.988 | 0.012 | |||
Total | 223 | 220 | 3 | 0 | 0.987 | 0.013 | 0 | 443 | 3 | 0.993 | 0.007 | |||
Severe | ||||||||||||||
A | 59 | 53 | 6 | 0 | 0.898 | 0.102 | 0 | 112 | 6 | 0.949 | 0.051 | c3.6x10-2 | ||
B | 34 | 32 | 2 | 0 | 0.941 | 0.059 | 0 | 66 | 2 | 0.971 | 0.029 | |||
C | 12 | 10 | 2 | 0 | 0.833 | 0.167 | 0 | 22 | 2 | 0.917 | 0.083 | |||
D | 196 | 181 | 14 | 1 | 0.923 | 0.071 | 0.006 | 376 | 16 | 0.959 | 0.041 | |||
Total | 301 | 276 | 24 | 1 | 0.917 | 0.080 | 0.003 | 576 | 26 | 0.957 | 0.043 | c3.0x10-4 | c2.0x10-4 | 6.64 (1.98, 22.29) |
d3.0x10-3 | e4.2x10-3 | d6.63 (1.94, 22.68) |
The four sub-cohorts presented here comprise the larger HEMATURIA cohort. Description of sub-cohorts can be found in Table 1.
a Genotypic association analysis p-values (dominant model);
b Allelic association analysis p-values;
c Fisher’s Exact Test (2-sided);
d Adjusted for gender and age;
e Adjusted for patients’ kinships