Table 1.
Primer sequences for RT-PCR and qRT-PCR of anthocyanin biosynthetic genes
Gene | Accession No. | Primer sequences |
---|---|---|
CHS | AF311783 | F, 5′- TTGTTCGAGCTTGTCTCTGC −3′ |
R, 5′- AGCCCAGGAACATCTTTGAG-3′ | ||
CHI | AB213651 | F, 5′- GTCAGGCCATTGAAAAGCTC −3′ |
R, 5′- CTAATCGTCAATGCCCCAAC −3′ | ||
F3H | AB289450 | F, 5′- CAAGGCATGTGTGGATATGG-3′ |
R, 5′- TGTGTCGTTTCAGTCCAAGG −3′ | ||
DFR | AB289448 | F, 5′- AACCAACAGTCAGGGGAATG −3′ |
R, 5′- TTGGACATCGACAGTTCCAG-3′ | ||
ANS | AB289447 | F, 5′- TGGCGTTGAAGCTCATACTG −3′ |
R, 5′- GGAATTAGGCACACACTTTGC −3′ | ||
ACTIN | AB158612 | F, 5′- GGTCATTACCATTGGCTCAGA −3′ |
R, 5′- CAACAAGTGATGGCTGGAATAAA −3′ |
CHS chalcone synthase, CHI chalcone isomerase, F3H flavanone-3-hydroxylase, DFR dihydroflavonol 4-reductase, ANS anthocyanidin synthase, ACTIN reference gene used for expression normalization
PCR conditions for RT-PCR: 95 °C (2 min) → [95 °C (20 s) → 57 °C (40 s) → 72 °C (30 s)] × 35 cycles → 72 °C (5 min) → 4 °C
PCR conditions for qRT-PCR: 95 °C (10 min) → [95 °C (30 s) → 57 °C (25 s) → 72 °C (35 s)] × 40 cycles → 95 °C (15 s) → 57 °C (30 s) → 95 °C (15 s)