Table 2.
The averages of the number of estimated edges, the five performance measures and the computation time (sec.) over 50 datasets
| p | n | Method | SEN | SPE | FDR | MISR | MCC | Time | |
|---|---|---|---|---|---|---|---|---|---|
| 83 | 41 | GeneNet | 6.04 | 5.32 | 99.98 | 6.57 | 2.88 | 19.21 | 0.05 |
| (|E|=103) | (0.61) | (0.52) | (0.00) | (1.64) | (0.01) | (1.46) | (0.00) | ||
| NS | 2.36 | 2.21 | 100.00 | 2.83 | 2.96 | 13.29 | 0.09 | ||
| (0.20) | (0.19) | (0.00) | (1.42) | (0.01) | (0.82) | (0.01) | |||
| SPACE | 4.62 | 4.04 | 99.99 | 6.41 | 2.92 | 16.18 | 0.03 | ||
| (0.79) | (0.64) | (0.00) | (2.36) | (0.02) | (1.40) | (0.00) | |||
| ESPACE | 7.28 | 6.37 | 99.98 | 5.75 | 2.86 | 21.04 | 0.01 | ||
| (0.94) | (0.78) | (0.01) | (1.38) | (0.02) | (1.55) | (0.00) | |||
| GLASSO | 11.40 | 8.78 | 99.93 | 16.81 | 2.83 | 25.48 | 0.00 | ||
| (0.87) | (0.59) | (0.01) | (2.05) | (0.01) | (0.88) | (0.00) | |||
| GLASSO-SF | 9.90 | 7.53 | 99.94 | 16.30 | 2.86 | 23.44 | 0.12 | ||
| (0.81) | (0.53) | (0.01) | (2.08) | (0.01) | (0.84) | (0.00) | |||
| EGLASSO | 11.28 | 8.89 | 99.94 | 15.36 | 2.82 | 25.93 | 0.00 | ||
| (0.86) | (0.59) | (0.01) | (1.86) | (0.01) | (0.88) | (0.00) | |||
| PCACMI | 48.44 | 27.24 | 99.38 | 41.86 | 2.80 | 38.52 | 0.54 | ||
| (0.82) | (0.55) | (0.02) | (1.00) | (0.03) | (0.68) | (0.01) | |||
| CMI2NI | 48.72 | 27.88 | 99.39 | 40.82 | 2.77 | 39.35 | 0.54 | ||
| (0.85) | (0.55) | (0.02) | (0.96) | (0.03) | (0.65) | (0.01) | |||
| 83 | GeneNet | 34.74 | 31.17 | 99.92 | 7.05 | 2.16 | 52.97 | 0.06 | |
| (0.83) | (0.61) | (0.01) | (0.74) | (0.02) | (0.50) | (0.00) | |||
| NS | 15.14 | 14.52 | 99.99 | 1.07 | 2.59 | 37.20 | 0.15 | ||
| (0.43) | (0.41) | (0.00) | (0.38) | (0.01) | (0.55) | (0.01) | |||
| SPACE | 51.84 | 41.03 | 99.71 | 16.81 | 2.07 | 56.67 | 0.05 | ||
| (1.95) | (1.28) | (0.02) | (1.06) | (0.03) | (1.11) | (0.00) | |||
| ESPACE | 52.34 | 42.45 | 99.74 | 15.42 | 2.00 | 58.82 | 0.03 | ||
| (1.46) | (0.86) | (0.02) | (0.96) | (0.02) | (0.54) | (0.00) | |||
| GLASSO | 27.98 | 23.24 | 99.88 | 12.57 | 2.44 | 43.63 | 0.00 | ||
| (1.33) | (0.96) | (0.02) | (1.32) | (0.03) | (0.97) | (0.00) | |||
| GLASSO-SF | 28.04 | 22.82 | 99.86 | 14.53 | 2.47 | 42.86 | 0.13 | ||
| (1.31) | (0.90) | (0.02) | (1.41) | (0.02) | (0.89) | (0.00) | |||
| EGLASSO | 30.06 | 26.17 | 99.91 | 8.91 | 2.33 | 47.48 | 0.00 | ||
| (1.33) | (1.03) | (0.01) | (1.15) | (0.03) | (1.01) | (0.00) | |||
| PCACMI | 28.44 | 25.96 | 99.95 | 6.09 | 2.29 | 48.66 | 0.56 | ||
| (0.44) | (0.49) | (0.01) | (0.79) | (0.02) | (0.61) | (0.00) | |||
| CMI2NI | 28.66 | 26.76 | 99.97 | 3.85 | 2.25 | 50.02 | 0.54 | ||
| (0.45) | (0.46) | (0.01) | (0.61) | (0.02) | (0.53) | (0.01) |
The reported values for the SEN, SPE, FDR, MISR and MCC were multiplied by 100. Numbers in the parentheses denote the standard errors