Table 5.
Details of sequences used for this study
| Ribotype | Accession No. | TcdA/TcdB | Sequence Length | Serogroup |
|---|---|---|---|---|
| 001 | DQ060625 DQ060626 DQ060627 AJ300676 | +/+ | A.A: 756 Nuc: 2,271 |
G |
| 002 | DQ060628 DQ060629 | +/+ | A.A: 726 Nuc: 2,181 |
A2 |
| 005 | DQ060630 DQ060631 | +/+ | A.A: 610 Nuc: 1,833 |
A1 |
| 010 | DQ060633 AF478571 | −/− | A.A: 767 Nuc: 2,304 |
D |
| 012 | DQ060634 DQ060635 AJ291709 | +/+ | A.A: 719 Nuc: 2,160 |
C |
| 014 | DQ060638 | +/+ | A.A: 732 Nuc: 2,199 |
H |
| 016 | AF478570 | n/a | A.A: 610 Nuc: 1,833 |
A1 |
| 017 | DQ060640 AJ300677 | −/+ | A.A: 714 Nuc: 2,145 |
F |
| 027 | R20291 CD196 |
+/+ | A.A: 758 Nuc: 2,277 |
Unknown |
| 031 | DQ060641 | −/− | A.A: 739 Nuc: 2,220 |
K |
| 046 | DQ060636 | +/+ | A.A: 719 Nuc: 2,160 |
C |
| 054 | DQ060632 | +/+ | A.A: 610 Nuc: 1,833 |
A1 |
| 066 | DQ060639 | −/− | A.A: 732 Nuc: 2,199 |
A9 |
| 078 | DQ060643 | +/+ | A.A: 726 Nuc: 2,181 |
Unknown |
| 092 | DQ060637 | +/+ | A.A: 719 Nuc: 2,160 |
Unknown |
| 094 | DQ060642 | +/+ | A.A: 739 Nuc: 2,220 |
Unknown |
The table shown lists all the ribotypes used in the dataset. GenBank accession numbers for the slpA gene of each ribotype are given. In certain cases, slpA sequences from different strains within the same ribotype were included to allow as robust as possible analyses. Ribotype, accession number, toxin production, sequence length and serogroup are all included