|
| REAGENT or RESOURCE |
SOURCE |
IDENTIFIER |
|
| Antibodies |
|
| Guinea pig Anti-Mouse K5 |
Fuchs Lab |
N/A |
|
| Rabbit Anti-Mouse K14 |
Fuchs Lab |
N/A |
|
| Rabbit Anti-Mouse K17 |
Fuchs Lab |
N/A |
|
| Guinea pig Anti-Mouse K6 |
Fuchs Lab |
N/A |
|
| Rabbit Anti- K10 Clone: Poly19054 |
Biolegend (Covance) |
Cat# 905401 |
|
| Rabbit Anti Cleaved Caspase-3 Clone: 269518 |
R&D |
Cat# MAB 835 |
|
| Armenian Hamster Anti-gd TCR Clone: GL3 AF647 |
Biolgend |
Cat# 118133 |
|
| Armenian Hamster Anti-gd TCR Clone: GL3 |
Biolgend |
Cat# 118101 |
|
| Rabbit Anti-pStat3 (Tyr705) Clone:D3A7 |
Cell Signaling |
Cat# 9145 |
|
| Rat Anti-CD104 Clone: 346-11A |
Biolegend |
Cat#123602 |
|
| Syrian Hamster Anti-Mouse TCR Vg3 Clone: 536 |
Biolegend |
Cat# 137505 |
|
| Rat Anti-Mouse CD3e Clone: 17A2 |
Biolegend |
Cat# 100212 |
|
| Armenian Hamster Anti-MouseTCRb Clone: H57–597 |
Biolegend |
Cat# 109201 |
|
| Armenian Hamster Anti-MouseTCRb Clone: H57–597 PerCp/Cy5.5 |
Biolegend |
Cat# 109227 |
|
| Donkey Anti-Rabbit, AF488 conjugated secondary |
Jackson ImmunoReseach |
Cat# 711-545-152 |
|
| Donkey Anti-Rabbit AF546, conjugated secondary |
Jackson ImmunoReseach |
Cat# 711-165-152 |
|
| Donkey Anti-Rabbit AF647, conjugated secondary |
Jackson ImmunoReseach |
Cat# 711-605-152 |
|
| Donkey Anti-Guinea pig AF488, conjugated secondary |
Jackson ImmunoReseach |
Cat# 706-545-148 |
|
| Donkey Anti-Guinea pig RRX conjugated secondary |
Jackson ImmunoReseach |
Cat# 706-295-148 |
|
| Donkey Anti-Guinea pig AF647, conjugated secondary |
Jackson ImmunoReseach |
Cat# 706-605-148 |
|
| Donkey Anti-Rat AF488, conjugated secondary |
Jackson ImmunoReseach |
Cat# 712-545-150 |
|
| Donkey Anti-Rat RRX, conjugated secondary |
Jackson ImmunoReseach |
Cat# 712-295-150 |
|
| Donkey Anti-Rat AF647, conjugated secondary |
Jackson ImmunoReseach |
Cat# 712-605-150 |
|
| Anti-Mouse Ly6c-FITC Clone: HK1.4 |
Biolegend |
Cat# 128005 |
|
| Anti-Mouse Ly6g-PE Clone:1A8 |
Biolegend |
Cat# 127607 |
|
| Anti-Mouse CD11c-PECy7 Clone: N418 |
Biolegend |
Cat# 117317 |
|
| Anti-Mouse CD11b-PacBlue Clone: M1/70 |
Biolegend |
Cat# 101223 |
|
| Anti-Mouse 1-A/1-E-AF700 Clone:M5/114.15.2 |
Biolegend |
Cat# 107621 |
|
| Anti-Mouse CD45-AF750 Clone: 30-F11 |
Biolegend |
Cat# 103153 |
|
| Anti-Mouse CD64-PerCP-Cy5 Clone:X54-5/7.1 |
Biolegend |
Cat# 139307 |
|
| Anti-Mouse CD34 eFluor 660 Clone: RAM34 |
eBiosciences |
Cat# 50-0341-82 |
|
| Anti-mouse Ly-6A/E (Sca-1) PerCP-Cy5.5 |
eBiosciences |
Cat# 45-5981-82 |
|
| Anti-Human CD49f (α6-integrin) PE |
BD Pharmingen |
Cat# 555736 |
|
| Chemicals, Peptides, and Recombinant Proteins |
|
| OCT Compount Tissue Tek |
VWR |
Cat# 25608-930 |
|
| 4′6′-diamidino-2-phenylindole (DAPI) |
Sigma-Aldrich |
Cat# 28718-90-3 |
|
| Prolong Gold |
Invitrogen |
Cat# P36930
|
|
| Ammonium Thiocyanate |
Sigma-Aldrich |
Cat# 221988 |
|
| Glutaraldehyde Solution |
Sigma-Aldrich |
Cat# G5882 |
|
| 16% Paraformaldehyde Solution |
Electron Microscopy Sciences |
Cat#15700 |
|
| Osmium Tetroxide |
Sigma-Aldrich |
Cat# 20816-12-0 |
|
| Mitomycin-C |
Sigma-Aldrich |
Cat# M7949 |
|
| Trypan Blue |
Sigma-Aldrich |
Cat# T8154 |
|
| Rhodamine B |
Sigma-Aldrich |
Cat # R6626 |
|
| Recombinant Murine Interlukin-6 |
R&D |
Cat# 406-ML-CF |
|
| TRI Reagent |
Sigma |
Cat# T3934 |
|
| Poly-L-lysine |
Sigma-Aldrich |
Cat# P4707 |
|
| Bovine Serum Albumin |
Sigma-Aldrich |
Cat# A7906 |
|
| Fibronectin Human Protein, Plasma |
Millipore |
Cat# FC010 |
|
| Corning Collagen I, Rat Taile |
Corning |
Cat# 354236 |
|
| Matrigel Matrix (Phenol Free) |
Corning |
Cat# 356237 |
|
| E-Media |
Fuchs Lab |
N/A |
|
| Trypsin-EDTA(25%) |
Gibco |
Cat# 25200056 |
|
| RPMI with L-glutamine |
ThermoFisher |
Cat# 11875-093 |
|
| Sodium Pyruvate (100mM) |
ThermoFisher |
Cat# 11360070 |
|
| Acid free HEPES (1M) |
ThermoFisher |
Cat# 15630080 |
|
| Liberase™ TL Research Grade |
Sigma-Aldrich |
Cat# 5401020001 |
|
| DNAse 1 from bovine pancreas |
Sigma-Aldrich |
Cat# D4263 |
|
| LIVE/DEAD Fixable Blue Dead Cell Stain Kit |
ThermoFisher |
Cat# L23105
|
|
| SYBR Green PCR Master Mix |
Appliedbiosystems |
Cat# 4367659 |
|
| Critical Commercial Assays |
|
| Click-IT EdU Alexa-Flour Imaging Kit |
Life Technologies |
Cat# C10337
|
|
| Directzol™ RNA MiniPrep |
Zymo |
Cat# R2050 |
|
| TrueSeq RNA Library PrepKit |
lllumina |
Cat# RS-122-2001 |
|
| SuperScript VILO cDNA Synthesis Kit and Master Mix |
ThermoFisher |
Cat# 11752050 |
|
| Deposited Data |
|
| Raw RNA-seq data files NCBI Gene Expression |
This paper |
GSE74283 |
|
| Experimental Models: Cell Lines |
|
| J2 fibroblast feeder cells |
Fuchs Lab |
N/A |
|
| Primary Mouse Keratinocyte Cell Lines |
Fuchs Lab |
N/A |
|
| Experimental Models: Organisms/Strains |
|
| C57BL6 Mice |
Jackson Laboratories |
JAX: 000664 |
|
| Aged C57BL6 Mice |
NIA |
|
|
| K14Cre |
Fuchs Lab |
N/A |
|
| Stat3fl/fl
|
Jackson Laboratories |
JAX:016923 |
|
| FVB/NJ |
Jackson Laboratories |
JAX:001800 |
|
| FVB/NTac |
Taconic Biosciences |
N/A |
|
| Non/ShiLtj |
Jackson Laboratories |
JAX:002423 |
|
| Recombinant DNA |
|
| pLKO.1 TRC Cloning Vector |
Moffat et al 2006 |
Addgene# 10878 |
|
| TRC Mouse Genome shRNA Library |
Dharmacon |
Cat# RMM4013 |
|
|
Sequence-Based Reagents: See Supplemental Table 7
|
|
| Software and Algorithms |
|
| Fiji (ImageJ) |
https://fiji.sc/ |
N/A |
|
| Adobe Photoshop and Illustrator CS5 |
Adobe.com |
N/A |
|
| R |
https://www.r-project.org/ |
N/A |
|
| Bowtie2 |
Trapnell et. al 2012, Trapnel et. al., 2010
|
http://bowtie-bio.sourceforge.net/bowtie2/index.shtml |
|
| CummeRbund package in R |
http://compbio.mit.edu/cummeRbund/ |
N/A |
|
| Cufflinks |
Trapnell et. al 2012, Trapnell et. al., 2010
|
http://cole-trapnell-lab.github.io/cufflinks/ |
|
| Gene Set Enrichment Analysis (GSEA) |
Tamayo, et al. 2005, Mootha, Lindgren, et al. 2003 |
http://software.broadinstitute.org/gsea/index.jsp |
|
| MEME software suite (including TomTom) |
Bailey TL et al. 2009 |
http://meme-suite.org/doc/cite.html?man_type=web |
|
| FACS Diva software |
BD Biosciences |
N/A |
|
| FlowJo Software |
FlowJo |
N/A |
|
| Prism |
Graphpad |
N/A |
|
| Other |
|
|
|
| Sterile 1.5mm, 2mm, 4mm and 6mm Biopsy punch (Miltex) |
Integra |
Cat# 33-31A, 33-31, 33-34, 33-36 |
|
| Spectrum Tissue Pulverizer |
Fisher Scientific |
Cat# 189476 |
|