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. Author manuscript; available in PMC: 2017 Nov 17.
Published in final edited form as: Cell. 2016 Nov 17;167(5):1323–1338.e14. doi: 10.1016/j.cell.2016.10.052

REAGENT or RESOURCE SOURCE IDENTIFIER

Antibodies

Guinea pig Anti-Mouse K5 Fuchs Lab N/A

Rabbit Anti-Mouse K14 Fuchs Lab N/A

Rabbit Anti-Mouse K17 Fuchs Lab N/A

Guinea pig Anti-Mouse K6 Fuchs Lab N/A

Rabbit Anti- K10 Clone: Poly19054 Biolegend (Covance) Cat# 905401

Rabbit Anti Cleaved Caspase-3 Clone: 269518 R&D Cat# MAB 835

Armenian Hamster Anti-gd TCR Clone: GL3 AF647 Biolgend Cat# 118133

Armenian Hamster Anti-gd TCR Clone: GL3 Biolgend Cat# 118101

Rabbit Anti-pStat3 (Tyr705) Clone:D3A7 Cell Signaling Cat# 9145

Rat Anti-CD104 Clone: 346-11A Biolegend Cat#123602

Syrian Hamster Anti-Mouse TCR Vg3 Clone: 536 Biolegend Cat# 137505

Rat Anti-Mouse CD3e Clone: 17A2 Biolegend Cat# 100212

Armenian Hamster Anti-MouseTCRb Clone: H57–597 Biolegend Cat# 109201

Armenian Hamster Anti-MouseTCRb Clone: H57–597 PerCp/Cy5.5 Biolegend Cat# 109227

Donkey Anti-Rabbit, AF488 conjugated secondary Jackson ImmunoReseach Cat# 711-545-152

Donkey Anti-Rabbit AF546, conjugated secondary Jackson ImmunoReseach Cat# 711-165-152

Donkey Anti-Rabbit AF647, conjugated secondary Jackson ImmunoReseach Cat# 711-605-152

Donkey Anti-Guinea pig AF488, conjugated secondary Jackson ImmunoReseach Cat# 706-545-148

Donkey Anti-Guinea pig RRX conjugated secondary Jackson ImmunoReseach Cat# 706-295-148

Donkey Anti-Guinea pig AF647, conjugated secondary Jackson ImmunoReseach Cat# 706-605-148

Donkey Anti-Rat AF488, conjugated secondary Jackson ImmunoReseach Cat# 712-545-150

Donkey Anti-Rat RRX, conjugated secondary Jackson ImmunoReseach Cat# 712-295-150

Donkey Anti-Rat AF647, conjugated secondary Jackson ImmunoReseach Cat# 712-605-150

Anti-Mouse Ly6c-FITC Clone: HK1.4 Biolegend Cat# 128005

Anti-Mouse Ly6g-PE Clone:1A8 Biolegend Cat# 127607

Anti-Mouse CD11c-PECy7 Clone: N418 Biolegend Cat# 117317

Anti-Mouse CD11b-PacBlue Clone: M1/70 Biolegend Cat# 101223

Anti-Mouse 1-A/1-E-AF700 Clone:M5/114.15.2 Biolegend Cat# 107621

Anti-Mouse CD45-AF750 Clone: 30-F11 Biolegend Cat# 103153

Anti-Mouse CD64-PerCP-Cy5 Clone:X54-5/7.1 Biolegend Cat# 139307

Anti-Mouse CD34 eFluor 660 Clone: RAM34 eBiosciences Cat# 50-0341-82

Anti-mouse Ly-6A/E (Sca-1) PerCP-Cy5.5 eBiosciences Cat# 45-5981-82

Anti-Human CD49f (α6-integrin) PE BD Pharmingen Cat# 555736

Chemicals, Peptides, and Recombinant Proteins

OCT Compount Tissue Tek VWR Cat# 25608-930

4′6′-diamidino-2-phenylindole (DAPI) Sigma-Aldrich Cat# 28718-90-3

Prolong Gold Invitrogen Cat# P36930

Ammonium Thiocyanate Sigma-Aldrich Cat# 221988

Glutaraldehyde Solution Sigma-Aldrich Cat# G5882

16% Paraformaldehyde Solution Electron Microscopy Sciences Cat#15700

Osmium Tetroxide Sigma-Aldrich Cat# 20816-12-0

Mitomycin-C Sigma-Aldrich Cat# M7949

Trypan Blue Sigma-Aldrich Cat# T8154

Rhodamine B Sigma-Aldrich Cat # R6626

Recombinant Murine Interlukin-6 R&D Cat# 406-ML-CF

TRI Reagent Sigma Cat# T3934

Poly-L-lysine Sigma-Aldrich Cat# P4707

Bovine Serum Albumin Sigma-Aldrich Cat# A7906

Fibronectin Human Protein, Plasma Millipore Cat# FC010

Corning Collagen I, Rat Taile Corning Cat# 354236

Matrigel Matrix (Phenol Free) Corning Cat# 356237

E-Media Fuchs Lab N/A

Trypsin-EDTA(25%) Gibco Cat# 25200056

RPMI with L-glutamine ThermoFisher Cat# 11875-093

Sodium Pyruvate (100mM) ThermoFisher Cat# 11360070

Acid free HEPES (1M) ThermoFisher Cat# 15630080

Liberase™ TL Research Grade Sigma-Aldrich Cat# 5401020001

DNAse 1 from bovine pancreas Sigma-Aldrich Cat# D4263

LIVE/DEAD Fixable Blue Dead Cell Stain Kit ThermoFisher Cat# L23105

SYBR Green PCR Master Mix Appliedbiosystems Cat# 4367659

Critical Commercial Assays

Click-IT EdU Alexa-Flour Imaging Kit Life Technologies Cat# C10337

Directzol™ RNA MiniPrep Zymo Cat# R2050

TrueSeq RNA Library PrepKit lllumina Cat# RS-122-2001

SuperScript VILO cDNA Synthesis Kit and Master Mix ThermoFisher Cat# 11752050

Deposited Data

Raw RNA-seq data files NCBI Gene Expression This paper GSE74283

Experimental Models: Cell Lines

J2 fibroblast feeder cells Fuchs Lab N/A

Primary Mouse Keratinocyte Cell Lines Fuchs Lab N/A

Experimental Models: Organisms/Strains

C57BL6 Mice Jackson Laboratories JAX: 000664

Aged C57BL6 Mice NIA

K14Cre Fuchs Lab N/A

Stat3fl/fl Jackson Laboratories JAX:016923

FVB/NJ Jackson Laboratories JAX:001800

FVB/NTac Taconic Biosciences N/A

Non/ShiLtj Jackson Laboratories JAX:002423

Recombinant DNA

pLKO.1 TRC Cloning Vector Moffat et al 2006 Addgene# 10878

TRC Mouse Genome shRNA Library Dharmacon Cat# RMM4013

Sequence-Based Reagents: See Supplemental Table 7

Software and Algorithms

Fiji (ImageJ) https://fiji.sc/ N/A

Adobe Photoshop and Illustrator CS5 Adobe.com N/A

R https://www.r-project.org/ N/A

Bowtie2 Trapnell et. al 2012, Trapnel et. al., 2010 http://bowtie-bio.sourceforge.net/bowtie2/index.shtml

CummeRbund package in R http://compbio.mit.edu/cummeRbund/ N/A

Cufflinks Trapnell et. al 2012, Trapnell et. al., 2010 http://cole-trapnell-lab.github.io/cufflinks/

Gene Set Enrichment Analysis (GSEA) Tamayo, et al. 2005, Mootha, Lindgren, et al. 2003 http://software.broadinstitute.org/gsea/index.jsp

MEME software suite (including TomTom) Bailey TL et al. 2009 http://meme-suite.org/doc/cite.html?man_type=web

FACS Diva software BD Biosciences N/A

FlowJo Software FlowJo N/A

Prism Graphpad N/A

Other

Sterile 1.5mm, 2mm, 4mm and 6mm Biopsy punch (Miltex) Integra Cat# 33-31A, 33-31, 33-34, 33-36

Spectrum Tissue Pulverizer Fisher Scientific Cat# 189476