Table 2. Top 15 Most Abundant Genera.

	SDR		HCC		SDR		HCC
	L.r.	Veh	L.r.	Veh	L.r.	Veh	L.r.	Veh
	Day 1				Day 6
Unclassified Clostridiales	46.86 ± 4.10	37.30 ± 5.36	44.61 ± 4.36	29.00 ± 5.68	42.63 ± 5.10	40.49 ± 5.99	39.00 ± 4.28	29.10 ± 4.21
Lactobacillus	18.54 ± 5.35	32.69 ± 8.67	24.12 ± 4.74	33.04 ± 9.82	12.67 ± 3.38	14.23 ± 3.66	24.97 ± 5.66	32.59 ± 7.98
Lachnospiraceae	7.96 ± 1.04	7.07 ± 0.80	7.03 ± 0.58	5.50 ± 1.20	7.32 ± 1.20	7.26 ± 1.11	6.61 ± 1.18	4.80 ± 0.72
S24-7	0.01 ± 0.01	0.33 ± 0.30	0.05 ± 0.02	2.15 ± 1.45	16.77 ± 6.17	9.58 ± 2.14	2.70 ± 1.50	5.19 ± 2.77
Bacteroides	6.01 ± 1.31	3.85 ± 0.67	3.94 ± 0.61	3.42 ± 0.70	1.62 ± 0.32	2.07 ± 0.57	5.49 ± 1.56	3.46 ± 0.96
Oscillospira	3.05 ± 0.26	3.26 ± 0.73	3.48 ± 0.34	2.17 ± 0.36	2.87 ± 0.86	3.21 ± 0.61	2.56 ± 0.29	2.47 ± 0.40
Shewanella	1.40 ± 0.38	1.76 ± 0.59	0.97 ± 0.20	5.40 ± 2.32	1.35 ± 0.27	4.00 ± 2.42	1.93 ± 0.81	1.69 ± 0.39
UnclassifiedRuminococcaceae	2.27 ± 0.25	2.40 ± 0.54	3.36 ± 1.13	1.55 ± 0.26	2.38 ± 0.60	2.10 ± 0.20	1.97 ± 0.32	1.65 ± 0.22
Lachnospiraceae; Ruminococcus	2.66 ± 0.50	1.37 ± 0.18	2.63 ± 0.58	1.32 ± 0.33	2.25 ± 0.38	2.13 ± 0.48	1.94 ± 0.90	1.94 ± 0.45
Unclassified Halomonadaceae	1.20 ± 0.29	1.56 ± 0.48	0.97 ± 0.18	4.29 ± 1.78	1.17 ± 0.19	2.60 ± 1.36	1.45 ± 0.46	1.28 ± 0.23
Halomonas	1.10 ± 0.27	1.40 ± 0.39	0.94 ± 0.17	4.04 ± 1.76	1.09 ± 0.16	3.27 ± 2.07	1.39 ± 0.43	1.32 ± 0.33
Parabacteroides	1.68 ± 0.44	1.21 ± 0.33	1.51 ± 0.25	1.04 ± 0.20	0.46 ± 0.14	0.33 ± 0.10	1.11 ± 0.17	1.67 ± 0.87
Prevotella	1.55 ± 0.43	1.49 ± 0.28	0.93 ± 0.20	1.01 ± 0.25	1.22 ± 0.28	1.05 ± 0.18	1.14 ± 0.27	2.25 ± 0.96
Enterobacteriaceae	0.00 ± 0.00	0.01 ± 0.00	0.01 ± 0.00	0.02 ± 0.01	0.60 ± 0.57	0.36 ± 0.24	1.29 ± 1.22	3.01 ± 2.99
Ruminococcus	1.13 ± 0.15	1.35 ± 0.39	1.07 ± 0.17	1.02 ± 0.19	0.99 ± 0.25	0.96 ± 0.14	0.92 ± 0.13	0.70 ± 0.11
	Day 12				Day 24
Unclassified Clostridiales	28.46 ± 6.06	32.56 ± 5.06	34.90 ± 5.11	36.20 ± 2.33	27.67 ± 3.54	34.29 ± 8.09	46.57 ± 6.93	44.66 ± 3.19
Lactobacillus	20.07 ± 6.75	15.31 ± 5.75	25.51 ± 6.49	25.61 ± 5.70	18.03 ± 2.76	21.98 ± 8.77	10.26 ± 3.58	15.37 ± 2.05
Lachnospiraceae	5.22 ± 0.87	7.03 ± 1.14	6.81 ± 0.92	8.13 ± 1.25	4.30 ± 0.60	6.39 ± 0.66	7.08 ± 1.08	6.24 ± 0.54
S24-7	12.05 ± 2.60	8.37 ± 2.80	2.31 ± 1.55	4.99 ± 1.92	18.76 ± 4.68	11.44 ± 3.93	8.24 ± 5.62	0.98 ± 0.44
Bacteroides	1.59 ± 0.28	3.49 ± 1.62	3.82 ± 0.98	3.78 ± 1.29	6.23 ± 2.07	2.81 ± 1.34	3.62 ± 1.44	6.47 ± 1.46
Oscillospira	2.47 ± 0.56	2.67 ± 0.48	2.59 ± 0.36	2.56 ± 0.33	2.23 ± 0.22	2.02 ± 0.48	2.68 ± 0.36	2.76 ± 0.34
Shewanella	1.75 ± 0.50	4.36 ± 1.90	2.09 ± 0.46	1.30 ± 0.15	1.44 ± 0.43	2.82 ± 0.82	2.70 ± 1.17	2.64 ± 0.52
UnclassifiedRuminococcaceae	2.22 ± 0.51	2.23 ± 0.26	1.78 ± 0.25	1.90 ± 0.28	1.45 ± 0.23	2.35 ± 0.74	2.53 ± 0.47	2.97 ± 0.55
Lachnospiraceae; Ruminococcus	2.23 ± 0.71	1.72 ± 0.39	1.44 ± 0.21	2.07 ± 0.37	1.86 ± 0.27	1.55 ± 0.14	1.74 ± 0.19	1.95 ± 0.35
Unclassified Halomonadaceae	1.34 ± 0.30	3.68 ± 1.50	1.69 ± 0.32	1.12 ± 0.13	1.37 ± 0.36	2.19 ± 0.57	1.83 ± 0.59	2.23 ± 0.47
Halomonas	1.42 ± 0.34	3.47 ± 1.50	1.54 ± 0.30	1.08 ± 0.10	1.22 ± 0.32	2.45 ± 0.87	2.06 ± 0.83	2.13 ± 0.46
Parabacteroides	1.21 ± 0.43	0.47 ± 0.09	1.43 ± 0.37	1.44 ± 0.42	0.92 ± 0.16	0.99 ± 0.20	1.42 ± 0.46	3.21 ± 0.77
Prevotella	0.74 ± 0.28	1.06 ± 0.41	0.63 ± 0.16	0.51 ± 0.13	1.48 ± 0.47	1.50 ± 0.47	0.87 ± 0.23	1.85 ± 0.53
Enterobacteriaceae	1.84 ± 1.74	3.01 ± 2.14	4.50 ± 2.84	0.49 ± 0.20	0.03 ± 0.01	0.04 ± 0.04	0.24 ± 0.20	0.01 ± 0.00
Ruminococcus	0.74 ± 0.15	0.81 ± 0.16	0.93 ± 0.13	0.88 ± 0.11	0.68 ± 0.10	0.83 ± 0.22	1.08 ± 0.19	1.12 ± 0.09