Table 1.
Genes overlapping with differentially methylated regions
| Genes with hypomethylated DMRs | ||||
|---|---|---|---|---|
| AATK b | FOXQ1 | LIPE b | MMP25-AS1 | RASA3 b |
| AATK-AS1 | FRAT1 | LIPE-AS1 b | NBEA* b | RRN3P1 |
| ADRA2B | GFPT2 b | LOC100049716 b | OTX2-AS1 | RTEL1-TNFRSF6B |
| AKAP10 | GJD2 | LOC100128568 | PABPC1L | SERPINB9P1 |
| AMH | GMDS-AS1 | LOC101930071 | PAPL b | SPNS2 |
| ATP8B1 | GNA15 | LOC729506 b | PAX8-AS1 | SPRNP1 |
| CAMTA1* b | GNB1L* | LSP1P3 | PAX9 | ST8SIA1 |
| CARM1 | HCN2 | MAB21L1 | PDP2 | SULT4A1 |
| CHD2# | HSBP1L1 | MEG9 b | PDXK b | TDRD9 b |
| CHST13 | IL17RD | MEI1 | PGAM2 | TMEM240 |
| COL27A1 | IRX1 | MIR3150A | PIP5KL1 | TMEM72-AS1 |
| EGFR | JSRP1 | MIR3150B | PRKCG | TNFRSF6B |
| FAM19A5 b | KCNK15 | MIR4458HG b | PRR35 | TRAF2 |
| FAM90A1 | KIAA1024 | MIR548AI b | RAI1* b | ZCCHC14 |
| FHAD1 b | LHX9 | MMP25 | ||
| Genes with hypermethylated DMRs region | ||||
| ADCY2 b | DPP9 | LHFPL2 | PRKCDBP | TEX101 b |
| ADORA2B | DUSP5 | LINC00664 | R3HDM4 b | TINCR b |
| ASB16 | EIF2AK4 b | LINC01252 b | RASL11A | TM4SF1 |
| BTN1A1 | EPHA1 | LOC100507389 | RIMS1* b | TMEM102 |
| C3 | EVA1B | LOC101926935 | RSPO3 | TMEM200C b |
| CACNA2D4 | FAM171A2 b | LOC101929124 | SHH | TNFAIP8L1 b |
| CAPN15 | FAM207A b | LOC102724927 | SLC7A5 b | TONSL |
| CDH4 | FRMD4A b | LOC339807 | SMG9 | VIPR2 |
| CHMP6 | FUK b | LOC442028 | SNRPN+ b | WNT7B b |
| CHST2 | HDAC4+ b | LOC728613 b | SNURF+ b | YPEL1 |
| CNTFR | IL21R-AS1 | LRRC14B | SPRY2 b | ZC3H4 |
| COG1 | INS-IGF2 | MVB12B b | SPTBN4 | ZFP36 |
| CRLF1 | JAK3 | NOTCH1 b | STPG2 | ZMIZ1 b |
| CYP26C1 | KCNE4 | NUDT19 | TBCD b | ZNF703 b |
| DOT1L | KLHL26 | NXN | TES | |
*
autism candidate, rare single gene variant
#
autism candidate, copy number variant
+
autism candidate, genetic association
b
DMR also found either hypermethylated or hypomethylated in Dup15q brain (Dunaway, et al, in press)