Table 3.
Gene list of plastomes of six Rehmannia species.
| Category | Group | Name |
|---|---|---|
| Photosynthesis related genes | Rubisco | rbcL |
| Photosystem I | psaA, psaB, psaC, psaI, psaJ | |
| Assembly/stability of photosystem I | ** ycf3 | |
| Photosystem II | psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, psbZ | |
| ATP synthase | atpA, atpB, atpE, * atpF, atpH, atpI | |
| cytochrome b/f complex | petA, * petB, * petD, petG, petL, petN | |
| cytochrome c synthesis | ccsA | |
| NADPH dehydrogenase | * ndhA, *,a ndhB, ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK | |
| Transcription and translation related genes | transcription | rpoA, rpoB, *rpoC1, rpoC2 |
| ribosomal proteins | rps2, rps3, rps4, a rps7, rps8, rps11, ** rps12, rps14, rps15, *rps16, rps18, rps19, *,arpl2, rpl14, * rpl16, rpl20, rpl22, a rpl23, rpl32, rpl33, rpl36 | |
| translation initiation factor | infA | |
| RNA genes | ribosomal RNA | arrn5, a rrn4.5, a rrn16, a rrn23 |
| transfer RNA | *,a trnA-UGC, # trnA-ACG, trnL-UAG, atrnA-GUU, *,atrnI-GAU, a trnV-(GAC), a trnL-CAA, a trnH-CAU, trnP-UGG, trnT-CCA, trnM-CAU, * trnV-UAC, trnP-GAA, * trnL-UAA, trnT-UGU, trnS-GGA, trnfM-CAU, trnG-GCC, trnS-UGA, trnT-GGU, trnG-UUC, trnT-GUA, trnA-GUC, trnC-GCA, trnA-UCU, * trnG-UCC, trnS-GCU, trnG-UUG, * trnL -UUU, trnH-GUG, trnA-GUU | |
| Other genes | RNA processing | matK |
| carbon metabolism | cemA | |
| fatty acid synthesis | accD | |
| proteolysis | ** clpP | |
| Genes of unknown function | conserved reading frames | a ycf1, a ycf2, ycf4, a ycf15 |
* gene with one intron, ** gene with two introns, a gene with two copies.