Fig. 1.

Changes in gene expression profiles. a Letters in figure legends should be in uppercase Number of up-regulated genes identified in the two locations (Ac and Sa) for the three genotypes analyzed (H, SM and RSV). b, c and d List of top 10 up-regulated genes in both locations in H, SM and RSV, respectively. ACS: 1-aminocyclopropane-1-carboxylate synthase, PAL: Phenylalanine ammonia-lyase, MLP: Major latex-like protein, LOX: Lipoxygenase, MSP: Male sterility 5 family protein PPase: Pyrophosphate-energized proton pump, GASA2: Gibberellin-regulated protein 2, LHC: Chlorophyll a/b binding protein, ERF9: Ethylene-responsive transcription factor 9, EXO: Exocyst complex protein EXO70, PUB: U-box domain-containing protein, MORC: MORC family CW-type zinc finger 3, Ole e 1: Pollen Ole e 1 allergen and extensin, XPR1: Xenotropic and polytropic retrovirus receptor, PUB15: U-box domain-containing protein 15. Asterisks indicate genes absent in one location. To avoid an infinite fold-change of transcripts that did not express in one location, transcripts were augmented with small fragments per million of mapped reads (FPKM, 0,0001) prior to binary logarithmic transformation add a point at end od each legend