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. 2017 Mar 28;4:170033. doi: 10.1038/sdata.2017.33

Table 1. Associated metadata for the cell lines used in this study.

Source Name Characteristics [organism] Characteristics [organism part] Characteristics [Matched PDX] Method Sample Name Factor Value [Growth Media] Factor Value [Detachment Method]
Listed are the cell lines used in this study, matched PDX if applicable, and culturing media.              
CHP-134 cell line Homo sapiens Neuroblastoma NA Total RNA extraction CHP-134 RPMI 1,640, 10% FBS, 1% Penicillin/Streptomycin, 2 mM L-Glutamine 0.02% Versene
CHP-212 cell line Homo sapiens Neuroblastoma NA Total RNA extraction CHP-212 RPMI 1,640, 10% FBS, 1% Penicillin/Streptomycin, 2 mM L-Glutamine 0.02% Versene
COG-N-415 cell line Homo sapiens Neuroblastoma COG-N-415x Total RNA extraction COG-N-415 IMDM, 20% FBS, 1% Penicillin/Streptomycin, 2 mM L-glutamine, 1:1,000 ITS Premix Supplement n/a
COG-N-440 cell line Homo sapiens Neuroblastoma COG-N-440x Total RNA extraction COG-N-440 IMDM, 20% FBS, 1% Penicillin/Streptomycin, 2 mM L-glutamine, 1:1,000 ITS Premix Supplement 0.02% Versene
COG-N-453 cell line Homo sapiens Neuroblastoma COG-N-453x Total RNA extraction COG-N-453 IMDM, 20% FBS, 1% Penicillin/Streptomycin, 2 mM L-glutamine, 1:1,000 ITS Premix Supplement n/a
COG-N-471nb cell line Homo sapiens Neuroblastoma COG-N-471x Total RNA extraction COG-N-471nb Neurobasal-A plus 50 ng/ml rhEGF, 50 ng/ml rhFGF, 2 mM L-glutamine, 1X B27, and 1X N2 0.02% Versene
COG-N-496 cell line Homo sapiens Neuroblastoma COG-N-496x Total RNA extraction COG-N-496 IMDM, 20% FBS, 1% Penicillin/Streptomycin, 2 mM L-glutamine, 1:1,000 ITS Premix Supplement 0.02% Versene
COG-N-519 cell line Homo sapiens Neuroblastoma COG-N-519x Total RNA extraction COG-N-519 IMDM, 20% FBS, 1% Penicillin/Streptomycin, 2 mM L-glutamine, 1:1,000 ITS Premix Supplement 0.02% Versene
COG-N-534 cell line Homo sapiens Neuroblastoma COG-N-534m Total RNA extraction COG-N-534 IMDM, 20% FBS, 1% Penicillin/Streptomycin, 2 mM L-glutamine, 1:1,000 ITS Premix Supplement 0.02% Versene
COG-N-549 cell line Homo sapiens Neuroblastoma COG-N-549x Total RNA extraction COG-N-549 IMDM, 20% FBS, 1% Penicillin/Streptomycin, 2 mM L-glutamine, 1:1,000 ITS Premix Supplement 0.02% Versene
COG-N-557nb cell line Homo sapiens Neuroblastoma COG-N-557x Total RNA extraction COG-N-557nb Neurobasal-A plus 50 ng/ml rhEGF, 50 ng/ml rhFGF, 2 mM L-glutamine, 1X B27, and 1X N2 0.02% Versene
COG-N-561 cell line Homo sapiens Neuroblastoma COG-N-561x Total RNA extraction COG-N-561 IMDM, 20% FBS, 1% Penicillin/Streptomycin, 2 mM L-glutamine, 1:1,000 ITS Premix Supplement 0.02% Versene
COG-N-573 cell line Homo sapiens Neuroblastoma COG-N-573x Total RNA extraction COG-N-573 IMDM, 20% FBS, 1% Penicillin/Streptomycin, 2 mM L-glutamine, 1:1,000 ITS Premix Supplement 0.02% Versene
Felix cell line Homo sapiens Neuroblastoma FELIXx Total RNA extraction Felix (COG-N-426) IMDM, 20% FBS, 1% Penicillin/Streptomycin, 2 mM L-glutamine, 1:1,000 ITS Premix Supplement 0.02% Versene
IMR-05 cell line Homo sapiens Neuroblastoma NA Total RNA extraction IMR-05 RPMI 1,640, 10% FBS, 1% Penicillin/Streptomycin, 2 mM L-Glutamine 0.02% Versene
IMR-32 cell line Homo sapiens Neuroblastoma NA Total RNA extraction IMR-32 RPMI 1,640, 10% FBS, 1% Penicillin/Streptomycin, 2 mM L-Glutamine 0.02% Versene
KELLY cell line Homo sapiens Neuroblastoma NA Total RNA extraction KELLY RPMI 1,640, 10% FBS, 1% Penicillin/Streptomycin, 2 mM L-Glutamine 0.02% Versene
LA-N-5 cell line Homo sapiens Neuroblastoma NA Total RNA extraction LA-N-5 RPMI 1,640, 10% FBS, 1% Penicillin/Streptomycin, 2 mM L-Glutamine 0.02% Versene
LA-N-6 cell line Homo sapiens Neuroblastoma NA Total RNA extraction LA-N-6 RPMI 1,640, 10% FBS, 1% Penicillin/Streptomycin, 2 mM L-Glutamine 0.02% Versene
NB-1 cell line Homo sapiens Neuroblastoma NA Total RNA extraction NB-1 RPMI 1,640, 10% FBS, 1% Penicillin/Streptomycin, 2 mM L-Glutamine n/a
NB-16 cell line Homo sapiens Neuroblastoma NA Total RNA extraction NB-16 RPMI 1,640, 10% FBS, 1% Penicillin/Streptomycin, 2 mM L-Glutamine 0.05% Trypsin/EDTA
NB-1,643 cell line Homo sapiens Neuroblastoma NB-1,643 Total RNA extraction NB-1,643 IMDM, 20% FBS, 1% Penicillin/Streptomycin, 2 mM L-glutamine n/a
NB-1,691 cell line Homo sapiens Neuroblastoma NB-1,691 Total RNA extraction NB-1,691 RPMI 1,640, 10% FBS, 1% Penicillin/Streptomycin, 2 mM L-Glutamine 0.05% Trypsin/EDTA
NB-69 cell line Homo sapiens Neuroblastoma NA Total RNA extraction NB-69 RPMI 1,640, 10% FBS, 1% Penicillin/Streptomycin, 2 mM L-Glutamine 0.02% Versene
NB-EBc1 cell line Homo sapiens Neuroblastoma NB-EBc1 Total RNA extraction NB-EBc1 RPMI 1,640, 10% FBS, 1% Penicillin/Streptomycin, 2 mM L-Glutamine 0.02% Versene
NB-SD cell line Homo sapiens Neuroblastoma NB-SD Total RNA extraction NB-SD RPMI 1,640, 10% FBS, 1% Penicillin/Streptomycin, 2 mM L-Glutamine 0.02% Versene
NBL-S cell line Homo sapiens Neuroblastoma NA Total RNA extraction NBL-S RPMI 1,640, 10% FBS, 1% Penicillin/Streptomycin, 2 mM L-Glutamine 0.02% Versene
NGP cell line Homo sapiens Neuroblastoma NA Total RNA extraction NGP RPMI 1,640, 10% FBS, 1% Penicillin/Streptomycin, 2 mM L-Glutamine 0.02% Versene
NLFcell line Homo sapiens Neuroblastoma NA Total RNA extraction NLF RPMI 1,640, 10% FBS, 1% Penicillin/Streptomycin, 2 mM L-Glutamine 0.02% Versene
NMB cell line Homo sapiens Neuroblastoma NA Total RNA extraction NMB RPMI 1,640, 10% FBS, 1% Penicillin/Streptomycin, 2 mM L-Glutamine 0.02% Versene
RPE-1 cell line Homo sapiens Epithelial NA Total RNA extraction RPE-1 RPMI 1,640, 10% FBS, 1% Penicillin/Streptomycin, 2 mM L-Glutamine 0.05% Trypsin/EDTA
SH-SY5Y cell line Homo sapiens Neuroblastoma NA Total RNA extraction SH-SY5Y RPMI 1,640, 10% FBS, 1% Penicillin/Streptomycin, 2 mM L-Glutamine 0.02% Versene
SK-N-AS cell line Homo sapiens Neuroblastoma SK-N-AS xenograft from cell line; not patient-derived Total RNA extraction SK-N-AS RPMI 1,640, 10% FBS, 1% Penicillin/Streptomycin, 2 mM L-Glutamine 0.05% Trypsin/EDTA
SK-N-BE(2) cell line Homo sapiens Neuroblastoma NA Total RNA extraction SK-N-BE(2) RPMI 1,640, 10% FBS, 1% Penicillin/Streptomycin, 2 mM L-Glutamine 0.02% Versene
SK-N-BE(2)-C cell line Homo sapiens Neuroblastoma NA Total RNA extraction SK-N-BE(2)-C RPMI 1,640, 10% FBS, 1% Penicillin/Streptomycin, 2 mM L-Glutamine 0.02% Versene
SK-N-DZ cell line Homo sapiens Neuroblastoma NA Total RNA extraction SK-N-DZ RPMI 1,640, 10% FBS, 1% Penicillin/Streptomycin, 2 mM L-Glutamine 0.02% Versene
SK-N-FI cell line Homo sapiens Neuroblastoma NA Total RNA extraction SK-N-FI RPMI 1,640, 10% FBS, 1% Penicillin/Streptomycin, 2 mM L-Glutamine 0.02% Versene
SK-N-SH cell line Homo sapiens Neuroblastoma NA Total RNA extraction SK-N-SH RPMI 1,640, 10% FBS, 1% Penicillin/Streptomycin, 2 mM L-Glutamine 0.05% Trypsin/EDTA
SMS-KAN cell line Homo sapiens Neuroblastoma NA Total RNA extraction SMS-KAN RPMI 1,640, 10% FBS, 1% Penicillin/Streptomycin, 2 mM L-Glutamine 0.02% Versene
SMS-SAN cell line Homo sapiens Neuroblastoma NA Total RNA extraction SMS-SAN RPMI 1,640, 10% FBS, 1% Penicillin/Streptomycin, 2 mM L-Glutamine 0.02% Versene
Human Fetal Brain Homo sapiens Brain NA NA Brain NA NA