Table 2. Mean nucleotide distances in a 2305 bp fragment of the 16S-23S rRNA genes among genotypes 1V, G1, G2, atypical C.psittaci isolate Prk/Daruma, C. abortus strains, and typical C. psittaci strains.
15-58d/44 (1V) | 15-70d/24 (G1) | 15-49d/3 (G2) | C.psittaci Prk/Darum. | C.abortus S26/3 | C.abortus B577 | C.abortus POS | C.abortus LLG | C.psittaci Mat116 | C.psittaci GR9 | C.psittaci WS/RT/E30 | C.psittaci WC | C.psittaci NJ1 | C.psittaci MN | C.psittaci CP3 | C.psittaci VS225 | C.psittaci 6BC | C.psittaci M56 | C.psittaci 84/55 | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
15-58d/44 (1V) | |||||||||||||||||||
15-70d/24 (G1) | 0.005 | ||||||||||||||||||
15-49d/3 (G2) | 0.009 | 0.007 | |||||||||||||||||
C.psittaci Prk/Daruma | 0.004 | 0.002 | 0.006 | ||||||||||||||||
C.abortus S26/3 | 0.005 | 0.004 | 0.008 | 0.003 | |||||||||||||||
C.abortus B577 | 0.006 | 0.005 | 0.009 | 0.004 | 0.001 | ||||||||||||||
C.abortus POS | 0.006 | 0.004 | 0.008 | 0.003 | 0.003 | 0.004 | |||||||||||||
C.abortus LLG | 0.006 | 0.004 | 0.008 | 0.003 | 0.003 | 0.004 | 0.000 | ||||||||||||
C.psittaci Mat116 | 0.010 | 0.008 | 0.010 | 0.007 | 0.009 | 0.010 | 0.009 | 0.009 | |||||||||||
C.psittaci GR9 | 0.010 | 0.008 | 0.010 | 0.007 | 0.009 | 0.010 | 0.009 | 0.009 | 0.002 | ||||||||||
C.psittaci WS/RT/E30 | 0.010 | 0.008 | 0.010 | 0.008 | 0.010 | 0.010 | 0.010 | 0.010 | 0.001 | 0.001 | |||||||||
C.psittaci WC | 0.010 | 0.007 | 0.010 | 0.007 | 0.009 | 0.010 | 0.009 | 0.009 | 0.001 | 0.001 | 0.002 | ||||||||
C.psittaci NJ1 | 0.012 | 0.010 | 0.011 | 0.010 | 0.011 | 0.012 | 0.011 | 0.011 | 0.006 | 0.006 | 0.006 | 0.005 | |||||||
C.psittaci MN | 0.012 | 0.010 | 0.011 | 0.009 | 0.011 | 0.012 | 0.011 | 0.011 | 0.006 | 0.006 | 0.007 | 0.006 | 0.008 | ||||||
C.psittaci CP3 | 0.012 | 0.010 | 0.011 | 0.009 | 0.011 | 0.012 | 0.011 | 0.011 | 0.006 | 0.006 | 0.007 | 0.006 | 0.008 | 0.001 | |||||
C.psittaci VS225 | 0.010 | 0.008 | 0.010 | 0.008 | 0.010 | 0.010 | 0.010 | 0.010 | 0.004 | 0.004 | 0.004 | 0.003 | 0.006 | 0.005 | 0.005 | ||||
C.psittaci 6BC | 0.009 | 0.007 | 0.008 | 0.007 | 0.008 | 0.009 | 0.008 | 0.008 | 0.003 | 0.003 | 0.003 | 0.002 | 0.005 | 0.003 | 0.003 | 0.001 | |||
C.psittaci M56 | 0.011 | 0.009 | 0.010 | 0.009 | 0.010 | 0.011 | 0.010 | 0.010 | 0.005 | 0.005 | 0.005 | 0.004 | 0.006 | 0.006 | 0.006 | 0.003 | 0.002 | ||
C.psittaci 84/55 | 0.009 | 0.007 | 0.008 | 0.007 | 0.008 | 0.009 | 0.008 | 0.008 | 0.003 | 0.003 | 0.003 | 0.002 | 0.005 | 0.003 | 0.003 | 0.001 | 0.000 | 0.002 |
The grayscale heatmap indicates the smallest distance with black (0.000) and the largest distance (0.012) with white.