Table 1.

Summary of EGRIN model

cMonkey model		Inferelator model
Genes	2,984 of 3,491 total genes in the genome	Transcription factors	128
Conditions	684	Environmental factors	16
Regulatory modules	170a/349
Motifs	148b/662
Networkc
Nodes	306d	Upregulation	573
Edges	919	Downregulation	346

Environment and Gene Regulatory Influence Network (EGRIN) model was constructed as described in Materials and Methods. This model includes both cMonkey and Inferelator algorithm input data and results together with different filtering parameters as defined below.

^aNumber of modules filtered for residual ≤ 0.5.

^bNumber of motifs filtered for e‐value < 10.

^cNetwork is filtered to only include influences with influence weight < −0.1 or > +0.1 and module residual < 0.5.

^dNodes include regulators and their targets regulatory modules.