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. 2017 Mar 30;7:45367. doi: 10.1038/srep45367

Table 1. Proposed GSL-glycan structures detected on the glycolipid membranes of ovarian cancer cells, IGROV1 (wildtype) and ∆B3GNT5 cells.

Type No Glycan Mass [M-H]- Glycan Structures PGC-ESI-QTOF-MS/MS
PGC-ESI-IT-MS/MS
IGROV1 B3GNT5-edited IGROV1 P1-enriched IGROV1 (Anugraham M, et al, 2015)
Neutral GSL 1 505.2 (Pk) Inline graphic 6.34 ± 0.31 4.72 ± 2.38 0.00
2 546.3 Inline graphic 0.00 0.00 0.00
3a 708.3 (Globo) Inline graphic 0.00 0.00 0.00
3b 708.3 (Asialo-GM1) Inline graphic 0.00 0.00 0.00
3c 708.3 (Neo-lacto) Inline graphic 4.52 ± 1.58 0.00 7.64
4 870.3 (P1) Inline graphic 0.00 0.00 2.43
5 911.3 Inline graphic 1.25 ± 0.48 0.00 Trace
Sialylated GSL 6 634.2 (GM3) Inline graphic 14.18 ± 0.61 23.40 ± 4.32 12.86
7 837.3 (GM2) Inline graphic 73.71 ± 2.40 71.88 ± 8.13 73.11
8a 999.3 (GM1) Inline graphic 0.00 0.00 0.68
8b 999.3 (α2-3 sialyl Paragloboside) Inline graphic 0.00 0.00 2.15
8c 999.3 (LSTc) Inline graphic 0.00 0.00 1.14

Structures were assigned based on MS/MS fragmentation (where possible) and known biological GSL synthetic pathway constraints. All structures were depicted according to the CFG (Consortium of Functional Glycomics) notation with linkage placement. Specific linkages corresponding to Gal-GlcNAc (Type 1/Type 2) lactosamine linkages are also indicated (where possible). Values represent mean relative ion intensities ± s.d. of three replicates based on their extracted ion chromatograms (EIC). GSL-glycan structures derived from P1-enriched IGROV1 cell line previously analyzed with PGC-ESI-IT-MS (20) are also shown for comparative profiling using two different MS platforms. Gb3 (Pk).

Inline graphic Glucose Inline graphic Galactose Inline graphicN-acetylglucosamine (GlcNAc) Inline graphicN-acetylgalactosamine (GalNAc) Inline graphicN-acetylneruaminic acid (NeuAc)

Inline graphic