Table 1. Relative expression levels of stress-responsive genes identified by RNA-seq profiling.
| Gene ID | Annotation | Normal (TPM*) |
NaCl (TPM*) |
||||
|---|---|---|---|---|---|---|---|
| WT | OX | KO | WT | OX | KO | ||
| AT5G52310 | RD29A (responsive to desiccation 29A) | 0.99 | 0.38 | 0.01 | 71.54 | 73.85 | 52.09 |
| AT5G52300 | RD29B (responsive to desiccation 29B) | 0.01 | 0.01 | 0.28 | 16.32 | 14.61 | 12.21 |
| AT5G25610 | RD22 (responsive to desiccation 22) | 36.67 | 11.53 | 44.81 | 182.8 | 280.38 | 373.55 |
| AT2G33380 | RD20 (responsive to desiccation 20) | 16.52 | 20.36 | 10.65 | 116.37 | 146.30 | 133.47 |
| AT1G20440 | COR47 (cold regulated 47) | 943.44 | 770.26 | 1405.98 | 3953.93 | 4602.60 | 5296.48 |
| AT2G42530 | COR15B (cold regulated 15B) | 0.01 | 0.01 | 0.01 | 4.12 | 3.80 | 6.10 |
| AT4G25490 | CBF1 (C-repeat/DRE binding factor 1) | 0.01 | 0.01 | 0.01 | 15.49 | 20.61 | 19.94 |
| AT4G26080 | ABI1 (abscisic acid insensitive 1) | 36.01 | 46.48 | 44.95 | 122.14 | 122.88 | 186.78 |
| AT5G57050 | ABI2 (abscisic acid insensitive 2) | 0.66 | 5.57 | 2.63 | 74.01 | 64.04 | 61.45 |
| AT2G36270 | ABI5 (abscisic acid insensitive 3) | 3.96 | 3.07 | 4.29 | 17.47 | 23.62 | 16.68 |
| AT5G67030 | ABA1 (abscisic acid deficient 1) | 49.55 | 44.95 | 75.24 | 287.96 | 282.38 | 264.50 |
| AT1G16540 | ABA3 (abscisic acid deficient 3) | 8.26 | 17.86 | 8.71 | 24.23 | 35.42 | 17.09 |
| AT3G14440 | NCED3 (9-cis-epoxycarotenoid dioxygenase 3) | 0.99 | 0.38 | 0.01 | 71.54 | 73.85 | 52.09 |
| AT5G35410 | SOS2 (salt overly sensitive 2) | 9.58 | 10.95 | 6.64 | 7.75 | 10.21 | 7.32 |
| AT5G24270 | SOS3 (salt overly sensitive 3) | 1.32 | 4.03 | 1.38 | 0.82 | 0.40 | 0.01 |
*TPM: number of transcripts per million tags.