Table 3.
Haplotype association analysis for markers flanking BTB-00352779
| First Marker a | Position b | Haplotype | -log10(p) | (p)B c | OR d | 0.95 CI e |
|---|---|---|---|---|---|---|
| ARS-BFGL-NGS-40630 | 60800770 | AGAGC | 0.57 | 1 | 0.65 | 0.30–1.40 |
| GAGGC | 0.02 | 1 | 1.02 | 0.46–2.27 | ||
| GGAGC | 1.16 | 1 | 0.28 | 0.07–1.20 | ||
| AAAGA | 7.63 | 0.0085 | 7.90 | 3.46–18.04 | ||
| AGAAC | 0.15 | 1 | 0.67 | 0.09–5.24 | ||
| AAAGC | 0.54 | 1 | ||||
| AAGGC | 0.45 | 1 | 0.04 | |||
| ARS-BFGL-NGS-115798 | 60823250 | GAGCA | 0.52 | 1 | 0.67 | 0.31–1.44 |
| AGGCA | 0.10 | 1 | 0.90 | 0.40–2.00 | ||
| GAGCC | 1.21 | 1 | 0.27 | 0.06–1.17 | ||
| AAGAA | 7.62 | 0.0087 | 7.90 | 3.46–18.04 | ||
| GAACA | 0.19 | 1 | 0.61 | 0.08–4.78 | ||
| AAGCC | 0.54 | 1 | ||||
| ARS-BFGL-NGS-12436 | 60872538 | AGCAA | 0.51 | 1 | 0.67 | 0.31–1.45 |
| GGCAA | 0.10 | 1 | 0.90 | 0.40–1.99 | ||
| AGCCG | 1.57 | 1 | 0.22 | 0.05–0.95 | ||
| AGAAA | 7.62 | 0.0087 | 7.90 | 3.46–18.04 | ||
| AACAG | 0.19 | 1 | 0.61 | 0.08–4.78 | ||
| ARS-BFGL-NGS-102 | 60952836 | GCAAA | 0.68 | 1 | 0.64 | 0.31–1.30 |
| GCCGA | 0.71 | 1 | 0.39 | 0.09–1.70 | ||
| GAAAA | 7.72 | 0.0069 | 7.99 | 3.50–18.23 | ||
| GCCGG | 1.14 | 1 | ||||
| ACAGA | 0.19 | 1 | 0.62 | 0.08–4.83 | ||
| BTB-00352779 | 60990733 | CAAAG | 0.76 | 1 | 0.61 | 0.30–1.25 |
| CCGAG | 0.68 | 1 | 0.40 | 0.09–1.75 | ||
| AAAAA | 7.97 | 0.0038 | 8.31 | 3.62–19.08 | ||
| CCGGG | 1.12 | 1 | ||||
| CAGAG | 0.18 | 1 | 0.64 | 0.08–4.96 |
a A moving window of 5 SNPs was used to determine haplotype associations. Each haplotype begins with the listed first SNP followed by four of the following consecutive SNPs: ARS-BFGL-NGS-40630, ARS-BFGL-NGS-115798, ARS-BFGL-NGS-12436, ARS-BFGL-NGS-102, BTB-00352779, Hapmap39688-BTA-81545, Hapmap49326-BTA-81546, ARS-BFGL-NGS-55438, Hapmap36177-SCAFFOLD210634_2319
b Positions according to NCBI UMD3.1.1
c Bonferroni corrected p-value
d OR: Odds ratio
e 95% confidence interval upper and lower limit