Skip to main content
. 2017 Mar 29;18:266. doi: 10.1186/s12864-017-3642-5

Table 1.

Description and expression of up-regulated genes encoding hydrolytic enzymes

Gene ID Descriptiona Expression level (hpi)b
1 3 6 12 24 48
1. Lipid Degradation
 SS1G_07661 cutinase (SsCuta) 3 3.9 4.3 4.7 3.4 -
 SS1G_13386 cutinase - - - - 14.9 29.6
 SS1G_12907 cutinase - - - - 29.7 236
 SS1G_09557 lipase/esterase 3.4 5.5 6.5 6.1 2.6 -
 SS1G_11473 lipase/esterase 2.2 - - - - 3.2
 SS1G_05990 lipase/esterase - - - - 2.2 -
 SS1G_00767 lipase/esterase - - - - - 34.4
 SS1G_03597 lipase/esterase - - - - - 5.1
 SS1G_01849 lipase/esterase - - - - - 2.7
 SS1G_08869 lipase class 3 - - - - - 2.8
 SS1G_14146 extracellular lipase - - - - 31.5 38.7
 SS1G_04490 extracellular lipase - - - - 2.5 3
 SS1G_00877 extracellular lipase - - - - - 4.3
 SS1G_14441 triacylglycerol lipase - - - - 5 6.9
 SS1G_13982 triacylglycerol lipase - - - - 4.8 27.5
 SS1G_01472 triacylglycerol lipase - - - - 3.6 13.1
 SS1G_03007 alpha beta-hydrolase (esterase) - 2.6 2.6 - - -
 SS1G_09718 alpha beta-hydrolase (esterase/lipase) - 2.1 2.9 - - -
 SS1G_01703 alpha beta-hydrolase (esterase/lipase) - 3.9 3.5 2.2 3.8 6.5
 SS1G_13361 alpha beta-hydrolase (esterase/lipase) - - - 2.3 3.2 2.2
 SS1G_11402 alpha beta hydrolase (esterase/lipase) - - - 3.6 4.8 3.7
 SS1G_13263 alpha beta hydrolase (esterase/lipase) - - - - 3.8 3.8
 SS1G_08133 alpha beta-hydrolase (esterase/lipase) - - - - - 2.5
 SS1G_02163 alpha beta-hydrolase (esterase/lipase) - - - - - 12.5
 SS1G_01953 GDSL lipase acylhydrolase family protein 3.6 4 5 4.9 4.8 5.6
 SS1G_13560 GDSL lipase acylhydrolase family protein - - - - 2.7 2.7
 SS1G_06389 GDSL lipase acylhydrolase family protein - - - - - 2.7
 SS1G_02708 cellulose-binding GDSL lipase - - - - 3.3 7.8
 SS1G_14289 cellulose-binding GDSL lipase - - - - 5.3 6.6
 SS1G_03610 cellulose-binding GDSL lipase - - - - 5.1 22.4
 SS1G_04592 cellulose-binding GDSL lipase - - - - 11.8 9.4
 SS1G_11930 carboxylesterase/lipase (cholinesterase) 4 3.9 8.9 5.2 - -
 SS1G_00376 carboxylesterase/lipase (cholinesterase) - - - - 4.4 9.2
 SS1G_09613 carboxylesterase/lipase (cholinesterase) - - - - - 4.7
 SS1G_04422 carboxylesterase/lipase (cholinesterase) - - - - - 3.2
 SS1G_11853 carboxylesterase/lipase (cholinesterase) - - - - - 3
 SS1G_04030 lysophospholipase - - 3.6 - 2.3 -
 SS1G_10482 lysophospholipase - - - - - 4.1
2. Polysaccharide Degradation
  2.1 Cellulose
  SS1G_08493 beta-1,4-endo-glucanase 2.6 - - - - -
  SS1G_00891 beta-1,4-endo-glucanase (cellulase) - 4.5 5.8 3.5 - 3.8
  SS1G_01485 beta-glucanase - - - - - 2.1
  SS1G_09365 endo-glucanase - - - - 2.7 -
  SS1G_03387 endo-glucanase - - - - 5.3 41.4
  SS1G_08837 endo-glucanase - - - - 10.3 36.4
  SS1G_04945 endo-glucanase - - - - - 2.3
  SS1G_01828 endo-glucanase - - - - - 2.6
  SS1G_09821 endo-glucanase - - - - - 144
  SS1G_03041 endo-glucanase - - - - - 292
  SS1G_00321 endo-glucanase - - - - - 4.2
  SS1G_00471 endo-glucanase - - - - - 2.1
  SS1G_06037 exo-glucanase - 3 3.2 - 9.9 12.3
  SS1G_02334 exo-glucanase (cellobiohydrolyase) - - - - 3.8 -
  SS1G_09020 exo-glucanase - - - - 15.1 79
  SS1G_00892 exo-glucanase - - - - 5.4 22.2
  SS1G_09118 exo-glucanase - - - - - 2.5
  SS1G_02245 exo-glucanase - - - - - 3.3
  SS1G_13872 exo-glucanase - - - - - 7.6
  SS1G_02501 Concanavalin A-like lectin/glucanase 5.1 8.7 6.1 3.1 - -
  SS1G_08907 glycoside hydrolase (beta-glucanase) 2.6 - - - - -
  SS1G_07863 cellobiose dehydrogenase 3.7 - - - - 22.1
  SS1G_05151 cellobiose dehydrogenase - - - - 5.9 6.6
  SS1G_05118 beta-glucosidase 2.4 - - - - -
  SS1G_01662 beta-glucosidase - - - - 2.8 9.5
  SS1G_09366 beta-glucosidase - - - - 2.8 8
  SS1G_06304 beta-glucosidase - - - - 2.6 6.8
  SS1G_07847 beta-glucosidase - - - - 3.1 4.7
  SS1G_07146 beta-glucosidase - - - - 7.4 18.7
  SS1G_13255 beta-glucosidase - - - - 40.4 54.8
  SS1G_05368 beta-glucosidase - - - - 3.2 4.6
  SS1G_12622 beta-glucosidase - - - - - 2.1
  SS1G_07162 beta-1,4-glucosidase - - - - - 2.3
  SS1G_09129 beta-glucosidase - - - - - 13.1
  SS1G_04264 beta-glucosidase - - - - - 2.2
  SS1G_01021 beta-glucosidase - - - - - 5.2
2.2 Pectin
 SS1G_10167 endo-polygalacturonase (SSPG1) - - - - 3.7 64.6
 SS1G_10698 endo-polygalacturonase (SSPG3) - - - - - 5.5
 SS1G_05832 exo-polygalacturonase 4.1 6.5 - - 4.2 32.4
 SS1G_02553 exo-polygalacturonase (exoPG2) - - - - - 22.6
 SS1G_04207 exo-polygalacturonase (exoPG1) - - - - 14.6 168
 SS1G_12057 exo-polygalacturonase - - - - - 4.2
 SS1G_03540 pectin lyase - - - - 4.5 3.3
 SS1G_10071 pectin lyase - - - - - 6.2
 SS1G_14449 pectin lyase - - - - - 2.4
 SS1G_04551 pectin methylesterase - - - - 11.6 35.8
 SS1G_00332 pectin methylesterase - - - - 33.9 178
 SS1G_03286 pectin methylesterase - - - - 4.8 16.5
 SS1G_00468 pectin methylesterase - - - - - 21.4
 SS1G_04095 rhamnogalacturanan acetylhydrolase 2.8 6.2 7.7 5.3 2.7 -
 SS1G_12048 rhamnogalacturanan acetylhydrolase - - - - - 33.5
 SS1G_11992 rhamnogalacturonan acetylesterase - - - - - 37.5
 SS1G_09857 rhamnogalacturonyl hydrolase - - - - - 8.6
 SS1G_12964 alpha-l-rhamnosidase - - 17.5 - - -
 SS1G_13501 alpha-l-rhamnosidase - - - - 3.1 21.2
 SS1G_04541 alpha-l-rhamnosidase - - - - 2 8.3
 SS1G_08229 rhamnogalacturonase 2.1 4.5 4.5 2.6 - -
 SS1G_07039 rhamnogalacturonase - - - - - 6
 SS1G_04552 endo-xylogalacturonan hydrolase - - - - 7.1 15.9
2.3 Hemicellulose
 SS1G_12191 endo-1,4-beta-xylanase - 5.3 7.9 4.6 6.4 25
 SS1G_10092 endo-beta-xylanase - - - - - 155
 SS1G_03618 endo-beta-xylanase - - - - - 451
 SS1G_07749 endo-beta-xylanase - - - - - 56.7
 SS1G_05140 xylanase 3.6 3.5 4.2 4.3 3.4 8.1
 SS1G_08104 acetylxylan esterase 23 14.2 58.3 42.1 26 107
 SS1G_05434 acetylxylan esterase - - - - 4 11.8
 SS1G_00746 beta-mannosidase - - - - 6.6 42.3
 SS1G_05977 beta-mannosidase - - - - 3.6 6.4
 SS1G_08208 endo-1,4-beta-mannosidase - - - - 3.6 8.9
 SS1G_08118 alpha-xylosidase - - - - 4.5 3.8
 SS1G_09367 alpha-xylosidase - - - - 2.2 -
 SS1G_11535 alpha-fucosidase - - - - - 2.5
 SS1G_04662 alpha-galactosidase - - - - 4.5 3.9
 SS1G_03386 alpha-galactosidase - - - - - 3.7
 SS1G_07904 feruloyl esterase - - - - 3.6 12
 SS1G_02462 alpha-l-arabinofuranosidase - - - - 5.3 21
 SS1G_03602 alpha-l-arabinofuranosidase - - - - 6.3 17.6
2.4 Arabinogalactans
 SS1G_01216 arabinogalactan endo-beta-galactosidase 4.1 9.6 11.9 7.2 4.1 -
 SS1G_11585 arabinogalactan endo-beta-galactosidase - - - - - 19.3
 SS1G_02618 galactan 1,3-beta-galactosidase - - - - 5.7 11
 SS1G_10842 beta-galactosidase 4.1 2.5 2.4 - 2.2 5.8
 SS1G_11763 beta-galactosidase - - - - 4.7 -
 SS1G_01572 beta-galactosidase - - - - 6.8 18.3
 SS1G_03647 beta-galactosidase - - - - 3.5 6.9
 SS1G_02781 beta-galactosidase - - - - - 2.7
 SS1G_09866 1,6-beta-galactanase - 4.8 4.5 3.1 3 12.4
 SS1G_11922 arabinan endo-1,5-alpha-L-arabinosidase - - - - 144.3 245
 SS1G_01238 beta-D-glucuronidase 7.6 - 4.7 - - -
 SS1G_02620 beta-glucuronidase - - - - 3.5 8.2
2.5 Lignin
 SS1G_04196 dihydrogeodin oxidase/laccase - 3.1 2.6 4.6 - -
 SS1G_06365 dihydrogeodin oxidase/laccase - 3.1 5.7 4.1 - 3.4
 SS1G_05112 dihydrogeodin oxidase/laccase - - - - - 6
2.6 Starch
 SS1G_01776 alpha-amylase - - 2.1 - - -
 SS1G_11100 alpha-amylase - - - - 6.6 5.2
 SS1G_01083 alpha-glucosidase 2.4 4.7 3 - 4.6 5.3
 SS1G_01005 alpha-glucosidase - - - - 9.2 7.2
2.7 Mannans
 SS1G_10867 endo-1,6-alpha-mannosidase - - - - 6.4 -
 SS1G_04468 endo-1,6-alpha-mannosidase - - - - 7.5 25.3
 SS1G_12937 endo-1,6-alpha-mannosidase - - - - - 10.4
 SS1G_05110 endo-1,6-alpha-mannosidase - - - - - 3.5
 SS1G_11579 endo-1,6-alpha-mannosidase - - - - - 3.5
 SS1G_09229 alpha 1,2 mannosidase - - - - 55 40.2
 SS1G_00505 alpha-1,2-mannosidase - - - - 9.8 4.7
 SS1G_04148 alpha-mannosidase - - - - 4.1 4
 SS1G_02022 alpha-mannosidase - - - - 12.5 10.9
 SS1G_04200 alpha-mannosidase - - - - 6 56.3
 SS1G_01334 alpha-mannosidase - - - - - 11.5
2.8 Callose
 SS1G_01422 1,3 (4)-beta-D-glucanase 2.2 - - - - -
 SS1G_10048 1,3 (4)-beta-D-glucanase - 2.1 - - 2.1 -
3. Protein Degradation
  3.1 Proteases
  SS1G_10992 caspase domain-containing protease 2.1 - - - - 7.1
  SS1G_00862 cysteine protease (calpain family) 6.1 5.1 6.3 3.4 3.2 -
  SS1G_09978 peptidase (family 41 protein) 3.2 - 3.2 2.9 - 6.4
  SS1G_07836 (acid) non-aspartyl protease (ACP1) - - - - - 40.4
  SS1G_05329 aspartyl protease 12.2 - - - - 4.6
  SS1G_02870 aspartyl protease 2 2.6 3 3 2.7 3.3
  SS1G_03181 aspartyl protease - - - - 3.9 16.6
  SS1G_06534 serine protease (trypsin-like) 2.8 3 - - - 3.9
  SS1G_12419 serine protease (subtilisin-like) - - 3 - - -
  SS1G_07655 serine protease (subtilisin-like) - - - - 8.5 19.8
  SS1G_02423 serine protease (subtilisin-like) - - - - - 2.2
  SS1G_03282 serine protease (subtilisin-like) - - - - - 2.2
  SS1G_07168 serine protease (subtilisin-like) - - - - - 2.5
  SS1G_12210 serine protease (subtilisin-like) - - - - - 7.3
  SS1G_05348 metalloprotease - - - - - 2.6
  SS1G_05349 metalloprotease - - - - - 3.1
3.2 Peptidases
 SS1G_04565 cytosolic no-pecific dipeptidase - - - - 26 9.2
 SS1G_10529 cytosolic no-pecific dipeptidase - - - - - 2.2
 SS1G_04140 dipeptidyl-peptidase - 2.5 - - - -
 SS1G_03087 membrane dipeptidase - - - - - 2.6
 SS1G_03392 proline dipeptidase - - - - 4.5 -
 SS1G_08920 proline dipeptidase - - - - 2.4 2
 SS1G_04958 tripeptidyl-peptidase - - - - 5 22.9
 SS1G_07268 tripeptidyl-peptidase - - - - 3.5 2.1
 SS1G_13922 tripeptidyl peptidase - - - - 8.9 50.4
 SS1G_09225 tripeptidyl peptidase - - - - 6.9 16.9
 SS1G_09268 tripeptidyl-peptidase - - - - 5.9 3.4
 SS1G_02857 tripeptidyl peptidase - - - - 6.4 2.5
 SS1G_03518 tripeptidyl peptidase - - - - - 6.1
 SS1G_01236 tripeptidyl peptidase - - - - - 9.7
 SS1G_08558 prolyl aminopeptidase 2.5 4.3 4.4 3.4 2.4 2.2
 SS1G_00617 prolyl aminopeptidase - - - 9.5 4.9 5.2
 SS1G_12775 prolyl aminopeptidase - - - - - 3
 SS1G_05449 carboxypeptidase - 2.5 - - 3.3 13.3
 SS1G_12413 carboxypeptidase - - - - 3.5 4.2
 SS1G_08855 carboxypeptidase - - - - 3.7 4.1
 SS1G_03361 carboxypeptidase - - - - 4.2 21.1
 SS1G_09475 carboxypeptidase - - - - - 13.1
 SS1G_13633 carboxypeptidase - - - - - 7.6
 SS1G_12499 carboxypeptidase - - - - - 11.5
 SS1G_04819 carboxypeptidase - - - - - 5.5
4. Other Hydrolytic Enzymes
 SS1G_01113 metallo-dependent amidohydrolase - - - - 3.2 -
 SS1G_09143 metallo-dependent amidohydrolase - - - - - 6.1
 SS1G_02141 alpha beta-hydrolase 4.6 - - - - -
 SS1G_11096 alpha beta-hydrolase - - - 2.1 5.7 2.6
 SS1G_08093 alpha beta-hydrolase (epoxide hydrolase) - - - - 4.4 9.2
 SS1G_04475 endo-alpha-1,4-polygalactosaminidase 3 - - - - 3.8
 SS1G_11842 sialidase 3.1 - 3.6 - - 9.8
 SS1G_01389 polysaccharide lyase family 7 protein - 4.9 4.9 5.2 - -
 SS1G_01493 glycoside hydrolase family 3 protein - - - - 4.2 17
 SS1G_09000 glycoside hydrolase family 5 protein 2.7 - - - 2.7 -
 SS1G_02369 glycoside hydrolase family 12 protein - - - - - 3.4
 SS1G_04497 glycoside hydrolase family 16 protein - - - - - 2
 SS1G_09789 glycoside hydrolase family 16 protein - - - - - 2.8
 SS1G_06426 glycoside hydrolase family 43 protein - - - - 2.4 5.9
 SS1G_07515 glycoside hydrolase family 43 protein - - - - 138 518
 SS1G_07656 glycoside hydrolase family 61 protein - - - - - 93.6
 SS1G_09251 glycoside hydrolase family 61 protein - - - - - 9.1
 SS1G_12106 glycoside hydrolase family 76 protein - - - - 3 13
 SS1G_12083 glycoside hydrolase family 115 protein - - - - 7.8 17
 SS1G_04152 glycoside hydrolase family 125 protein - 2.2 - - 6 12.5
 SS1G_12917 glycoside hydrolase family 128 protein - - - - 2.3 17.3

aAnnotation based on the presence of conserved PFAM domains and BLAST reports

bFold change relative to 0 h post inoculation (hpi). (-) No significant change in expression

More information about the genes can be found in Additional file 3: Table S3