Table 6.
Description and expression of up-regulated genes encoding transcription factors
| Gene ID | Descriptiona | Expression level (hpi)b | |||||
|---|---|---|---|---|---|---|---|
| 1 | 3 | 6 | 12 | 24 | 48 | ||
| 1. Zn2Cys6 (C6) | |||||||
| SS1G_06255 | Zn2 Cys6 transcription factor | 7.0 | 4.6 | 3.9 | 2.4 | - | - |
| SS1G_14383 | Zn2 Cys6 transcription factor | 3.5 | 4.4 | 3.5 | 2.1 | - | - |
| SS1G_08819 | Zn2 Cys6 transcription factor | 3.6 | 2.5 | 2.1 | 3.0 | - | - |
| SS1G_06907 | Zn2 Cys6 transcription factor | 4.1 | 4.1 | 3.3 | - | - | - |
| SS1G_02793 | Zn2 Cys6 transcription factor | 6.0 | 3.0 | - | - | - | - |
| SS1G_10324 | Zn2 Cys6 transcription factor | 2.0 | - | - | - | 2.0 | - |
| SS1G_02851 | Zn2 Cys6 transcription factor | 2.2 | - | - | - | - | - |
| SS1G_12532 | Zn2 Cys6 transcription factor | 2.2 | - | - | - | - | - |
| SS1G_12799 | Zn2 Cys6 transcription factor | - | 2.5 | 2.5 | - | - | - |
| SS1G_11949 | Zn2 Cys6 transcription factor | - | 2.7 | 2.5 | - | - | - |
| SS1G_00732 | Zn2 Cys6 transcription factor | - | 2.4 | - | 5.0 | - | - |
| SS1G_00398 | Zn2 Cys6 transcription factor | - | 4.1 | - | - | - | 4.8 |
| SS1G_01905 | Zn2 Cys6 transcription factor | - | - | - | - | 2.7 | - |
| SS1G_06876 | Zn2 Cys6 transcription factor | - | - | - | - | 2.3 | - |
| SS1G_00170 | Zn2 Cys6 transcription factor | - | - | - | - | 2.3 | - |
| SS1G_02339 | Zn2 Cys6 transcription factor | - | - | - | - | 2.0 | - |
| SS1G_07143 | Zn2 Cys6 transcription factor | - | - | - | - | 2.7 | - |
| SS1G_02791 | Zn2 Cys6 transcription factor | - | - | - | - | 2.9 | 3.0 |
| SS1G_00392 | Zn2 Cys6 transcription factor | - | - | - | - | 2.2 | 2.2 |
| SS1G_13144 | Zn2 Cys6 transcription factor | - | - | - | - | 2.1 | 3.0 |
| SS1G_02054 | Zn2 Cys6 transcription factor | - | - | - | - | 6.6 | 36.9 |
| SS1G_05109 | Zn2 Cys6 transcription factor | - | - | - | - | 6.7 | 7.2 |
| SS1G_05755 | Zn2 Cys6 transcription factor | - | - | - | - | 2.6 | 3.8 |
| SS1G_07003 | Zn2 Cys6 transcription factor | - | - | - | - | - | 4.6 |
| SS1G_10447 | Zn2 Cys6 transcription factor | - | - | - | - | - | 2.5 |
| SS1G_01353 | Zn2 Cys6 transcription factor | - | - | - | - | - | 4.1 |
| SS1G_11367 | Zn2 Cys6 transcription factor | - | - | - | - | - | 3.3 |
| SS1G_08351 | Zn2 Cys6 transcription factor | - | - | - | - | - | 2.1 |
| SS1G_03775 | Zn2 Cys6 transcription factor | - | - | - | - | - | 6.8 |
| SS1G_00787 | Zn2 Cys6 transcription factor | - | - | - | - | - | 2.8 |
| SS1G_01733 | Zn2 Cys6 transcription factor | - | - | - | - | - | 2.6 |
| SS1G_04056 | Zn2 Cys6 transcription factor | - | - | - | - | - | 2.7 |
| SS1G_11081 | Zn2 Cys6 transcription factor | - | - | - | - | - | 2.8 |
| SS1G_09741 | fungal specific transcription factor domain | 2.2 | 3.7 | 3.9 | 2.7 | - | - |
| SS1G_04333 | fungal specific transcription factor domain | 2.0 | 2.3 | 2.0 | - | - | - |
| SS1G_12561 | fungal specific transcription factor domain | 2.3 | 2.1 | - | - | - | - |
| SS1G_09823 | fungal specific transcription factor domain | - | - | 2.1 | - | 2.2 | 2.4 |
| SS1G_04846 | fungal specific transcription factor domain | - | - | - | - | 2.6 | 4.0 |
| SS1G_13882 | fungal specific transcription factor domain | - | - | - | - | 2.0 | - |
| SS1G_13729 | fungal specific transcription factor domain | - | - | - | - | 2.4 | - |
| SS1G_02758 | fungal specific transcription factor domain | - | - | - | - | 2.5 | - |
| SS1G_08406 | fungal specific transcription factor domain | - | - | - | - | 2.3 | - |
| SS1G_05809 | fungal specific transcription factor domain | - | - | - | - | 3.9 | - |
| SS1G_04057 | fungal specific transcription factor domain | - | - | - | - | - | 2.4 |
| SS1G_11395 | fungal specific transcription factor domain | - | - | - | - | - | 2.3 |
| SS1G_06361 | fungal specific transcription factor domain | - | - | - | - | - | 2.1 |
| 2. Cys2His2 | |||||||
| SS1G_01109 | C2H2 transcription factor | 19.8 | 26.1 | 26.6 | 15.6 | - | - |
| SS1G_01684 | C2H2 transcription factor | 2.6 | 3.1 | 2.7 | 2.0 | - | - |
| SS1G_04676 | C2H2 transcription factor | 2.0 | - | - | - | - | 7.3 |
| SS1G_07355 | C2H2 transcription factor (Pac1) | - | - | - | - | - | 8.4 |
| SS1G_10532 | C2H2 transcription factor | - | - | - | - | - | 20.5 |
| SS1G_00104 | C2H2 binding site | - | - | 2.5 | 3.1 | - | 5.4 |
| SS1G_09588 | C2H2 binding site | - | - | - | - | 2.9 | 4.4 |
| SS1G_06370 | C2H2 binding site | - | - | - | - | - | 2.1 |
| SS1G_09499 | C2H2 binding site | - | - | - | - | - | 3.1 |
| SS1G_07425 | C2H2 binding site | - | - | - | - | - | 4.3 |
| SS1G_06044 | C2H2 binding site | - | - | - | - | - | 2.3 |
| 3. basic leucine zipper (bZIP) | |||||||
| SS1G_10244 | bZIP transciption factor | 4.4 | 5.2 | - | 5.6 | - | - |
| SS1G_01411 | bZIP transciption factor | - | - | - | - | 2.0 | - |
| SS1G_00816 | bZIP transciption factor | - | - | - | - | - | 5.4 |
| SS1G_06075 | bZIP transciption factor | - | - | - | - | - | 7.7 |
| 4. Others | |||||||
| SS1G_14328 | transcription regulator BDF1 | 2.7 | 6.5 | 5.5 | 3.6 | - | - |
| SS1G_11030 | CP2 transcription factor | 4.9 | 3.2 | 2.5 | - | - | - |
| SS1G_04107 | MYB family transcription factor | 2.5 | 2.9 | - | - | - | - |
| SS1G_06257 | pex2/pex12 superfamily, zinc finger of C3HC4-type | 3.0 | 2.4 | - | - | - | - |
| SS1G_07430 | zinc finger domain | 3.0 | - | - | - | - | 2.8 |
| SS1G_03881 | regulator of G protein signaling domain protein (RGS) (GTPase activating proteins (GAPs) | 2.0 | - | - | - | - | - |
| SS1G_14385 | CBF/Mak21 transcription factor | 2.4 | - | - | - | - | - |
| SS1G_03280 | helix-loop-helix dna-binding protein (HlH) | 2.4 | - | - | - | - | - |
| SS1G_10206 | CHY and ring, zinc finger protein | - | 2.1 | - | - | - | - |
| SS1G_04050 | NF-X1 zinc finger transcription factor | - | 3.0 | - | - | - | - |
| SS1G_11663 | large tegument protein UL36 and similar to TFIIIC transcription initiation factor complex subunits Tfc3 | - | - | 2.1 | 2.0 | - | - |
| SS1G_03992 | transcription mediator subunit Med12 | - | - | 2.2 | - | - | - |
| SS1G_13930 | Bro1-Alix- like domain and pH-response regulator protein | - | - | - | - | 2.3 | - |
| SS1G_07542 | RING-H2 zinc finger protein | - | - | - | - | 2.3 | - |
| SS1G_06124 | mads-box mef2 type transcription factor (SRF type) | - | - | - | - | - | 3.5 |
| SS1G_03098 | homeobox transcription factor | - | - | - | - | - | 2.2 |
| SS1G_03835 | homeobox C2H2 transcription factor | - | - | - | - | - | 3.1 |
| SS1G_06987 | yippee zinc-binding protein | - | - | - | - | - | 2.4 |
| SS1G_01859 | MYB dna-binding containing domain protein | - | - | - | - | - | 6.2 |
| SS1G_08831 | (vWA) transcription factor (Von Willebrand factor type A) | - | - | - | - | - | 2.3 |
| SS1G_09890 | RAP transcription factor | - | - | - | - | - | 2.6 |
| SS1G_02756 | transcription factor protein | - | - | - | - | - | 8.5 |
| SS1G_10304 | tetratricopeptide (TPR) repeat transcriptional corepressor | - | - | - | - | - | 2.3 |
| SS1G_13511 | lipopolysaccharide (LPS)-induced transcription factor and LITAF-like zinc ribbon domain | - | - | - | - | - | 2.7 |
aAnnotation based on the presence of conserved PFAM domains and BLAST reports
bFold change relative to 0 h post inoculation (hpi). (-) No significant change in expression
More information about the genes can be found in Additional file 3: Table S3