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. 2017 Mar 29;8:397. doi: 10.3389/fpls.2017.00397

Table 2.

Identification, characterization and classification of putative AGP encoding genes in the Brassica rapa genome.

Subfamily Arabidopsis thaliana Brassica rapa
Gene name Gene ID Block Gene namea Gene ID PAST (%) SPb GPIc AP/PA/SP/TP repeats Amino acids Chromosome Sub-genome Block
Classical AtAGP1 At5g64310 X BrAGP1.1 Bra024284 59 Yes Yes 10/16/20/4 124 A06 LF X
BrAGP1.2 Bra031924 56 Yes Yes 8/14/24/2 130 A02 MF1 X
AtAGP2 At2g22470 I BrAGP2.1 Bra038521 62 Yes Yes 14/6/16/4 132 A09 LF I
BrAGP2.2 Bra030234 61 Yes Yes 16/10/14/4 132 A04 MF1 I
AtAGP3 At4g40090 U BrAGP3.1 Bra011806 61 Yes Yes 14/14/18/8 143 A01 LF U
BrAGP3.2 Bra010639 60 Yes Yes 14/12/18/10 143 A08 MF2 U
AtAGP4 At5g10430 R BrAGP4.1 Bra009032 71 Yes Yes 18/24/6/20 143 A10 LF R
BrAGP4.2 Bra006060 72 Yes Yes 14/20/8/18 141 A03 MF1 R
BrAGP4.3 Bra028587 71 Yes Yes 20/20/6/16 139 A02 MF2 R
AtAGP5 At1g35230 B
AtAGP6 At5g14380 R BrAGP6 Bra008762 66 Yes Yes 14/8/14/6 152 A10 LF R
AtAGP7 At5g65390 X
AtAGP9 At2g14890 H BrAGP9.1 Bra013116 70 Yes Yes 14/22/14/18 179 A03 MF2 H
BrAGP9.2 Bra039829 67 Yes Yes 14/18/16/16 166 Scaffold000178
AtAGP10 At4g09030 P BrAGP10.1 Bra038390 62 Yes No 6/2/8/6 81 A09 LF P
BrAGP10.2 Bra000670 65 Yes Yes 12/8/12/10 126 A03 MF1 P
AtAGP11 At3g01700 H BrAGP11.1 Bra000995 59 Yes Yes 16/4/8/4 136 A03 MF2 H
BrAGP11.2 Bra040548 63 Yes Yes 18/6/10/4 138 Scaffold000217
AtAGP25 At5g18690 R BrAGP25 Bra002180 50 Yes Yes 8/4/14/2 135 A10 LF R
AtAGP26 At2g47930 J BrAGP26 Bra021448 52 Yes Yes 4/2/20/2 140 A04 MF1 J
AtAGP27 At3g06360 F BrAGP27 Bra040224 55 Yes Yes 8/6/8/0 126 A01 MF1 F
AtAGP50 At1g24520 B BrAGP50.1 Bra032796 46 Yes Yes 4/0/8/2 119 A09 LF B
BrAGP50.2 Bra010966 48 Yes Yes 6/2/8/2 117 A08 MF1 B
BrAGP50.3 Bra012505 47 Yes Yes 4/2/10/0 119 A07 MF2 B
AtAGP51 At1g31250 B
AtAGP52 At1g63530 D BrAGP52 Bra027649 46 No No 8/24/16/24 420 A09 MF2 D
AtAGP53 At1g63540 D BrAGP53 Bra027648 46 Yes No 12/16/14/32 618 A09 MF2 D
AtAGP54 At2g28440 I BrAGP54.1 Bra011948 53 Yes Yes 12/18/54/2 234 A07 LF I
BrAGP54.2 Bra035700 44 Yes Yes 2/8/24/4 186 A04 MF1 I
AtAGP55 At2g45000 J BrAGP55 Bra004882 59 No Yes 46/38/26/22 784 A05 LF J
AtAGP56 At3g22070 F
AtAGP57 At3g45230 M BrAGP57 Bra038294 43 Yes Yes 8/8/24/2 168 A06 LF M
AtAGP58 At4g16980 U BrAGP58.1 Bra040103 56 No No 8/4/16/8 135 A01 LF U
BrAGP58.2 Bra021074 58 No Yes 12/2/16/4 130 A08 MF2 U
BrAGP59 Bra028633 53 Yes Yes 6/4/14/6 115 A02 MF2 R
BrAGP60 Bra035584 60 Yes Yes 24/24/50/18 339 A02 MF2 W
BrAGP61 Bra036401 70 Yes Yes 14/16/18/14 171 A07 LF H
AG-peptide AtAGP12 At3g13520 F BrAGP12.1 Bra027425 44 Yes Yes 2/4/4/0 61 A05 LF F
BrAGP12.2 Bra039397 47 Yes Yes 2/4/4/0 62 Scaffold000164
AtAGP13 At4g26320 U BrAGP13.1 Bra026448 46 Yes Yes 4/4/2/0 59 A01 LF U
BrAGP13.2 Bra019114 42 Yes Yes 4/2/2/0 59 A03 MF1 U
AtAGP14 At5g56540 W BrAGP14 Bra002808 43 Yes Yes 4/2/2/0 60 A10 LF W
AtAGP15 At5g11740 R BrAGP15.1 Bra008940 53 Yes Yes 4/2/4/0 64 A10 LF R
BrAGP15.2 Bra006115 53 Yes Yes 2/2/6/0 64 A03 MF1 R
BrAGP15.3 Bra023339 52 Yes Yes 4/2/4/0 64 A02 MF2 R
AtAGP16 At2g46330 J BrAGP16.1 Bra004546 42 Yes Yes 6/4/0/0 73 A05 LF J
BrAGP16.2 Bra000419 42 Yes Yes 6/4/0/0 73 A03 MF2 J
AtAGP20 At3g61640 N BrAGP20 Bra014427 40 Yes Yes 4/2/4/0 68 A04 MF1 N
AtAGP21 At1g55330 C BrAGP21.1 Bra037993 46 Yes Yes 4/4/2/0 59 A06 LF C
BrAGP21.2 Bra011914 46 Yes Yes 4/4/2/0 59 A07 MF2 C
BrAGP21.3 Bra030868 47 Yes Yes 4/4/2/0 58 A08 MF1 C
AtAGP22 At5g53250 W BrAGP22.1 Bra003071 38 Yes Yes 4/4/4/0 63 A10 LF W
BrAGP22.2 Bra029086 38 Yes Yes 4/4/4/0 63 A03 MF1 W
BrAGP22.3 Bra022641 38 Yes Yes 4/4/4/0 63 A02 MF2 W
AtAGP23 At3g57690 N BrAGP23.1 Bra007349 46 No Yes 4/6/0/0 61 A09 LF N
BrAGP23.2 Bra014611 44 No Yes 4/6/0/0 61 A04 MF1 N
BrAGP23.3 Bra003296 43 Yes Yes 4/6/0/0 61 A07 MF2 N
AtAGP24 At5g40730 S BrAGP24 Bra025551 37 Yes Yes 4/6/2/0 67 A04 LF S
AtAGP40 At3g20865 F BrAGP40.1 Bra031236 45 Yes Yes 4/4/2/0 64 A05 LF F
BrAGP40.2 Bra023919 47 Yes Yes 4/4/2/0 64 A01 MF1 F
AtAGP41 At5g24105 Q
AtAGP42 At1g51915 C BrAGP42 Bra030409 30 Yes No 0/2/2/0 77 A05 MF2 C
AtAGP43 At2g41905 J BrAGP43.1 Bra016902 44 Yes Yes 4/6/0/0 61 A04 MF1 J
BrAGP43.2 Bra000244 44 Yes Yes 4/6/0/0 61 A03 MF2 J
AtAGP44 At3g01730 F BrAGP44 Bra000992 39 Yes Yes 4/2/4/0 90 A03 MF2 F
AtAGP45 At5g12880 R BrAGP45 Bra008874 46 Yes No 2/0/4/0 76 A10 LF R
Lys-rich AtAGP17 At2g23130 I BrAGP17 Bra039184 68 Yes Yes 44/42/56/12 305 A09 LF I
AtAGP18 At4g37450 U BrAGP18.1 Bra011767 62 Yes Yes 20/14/26/4 178 A01 LF U
BrAGP18.2 Bra017823 65 Yes Yes 30/30/28/10 202 A03 MF1 U
AtAGP19 At1g68725 E
a

Boldface indicates a protein that is treated as “high confidence” AGPs;

b

Signal peptide;

c

GPI was predicted both by big-PI Plant Predictor and PSORT Prediction.