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. 2017 Mar 5;9(3):235. doi: 10.3390/nu9030235

Table 1.

Description of tagging SNPs including interaction analysis in sample 1.

SNP CHR Position Locus Gene Symbol Location MA MAF RAF OR 1 STAT p
rs10924160 1 243519469 1q44 KIF26B intron C 0.345 0.345 1.180 4.146 3.39 × 10−5
rs7554672 1 219339781 1q41 LOC101929750 intron A 0.411 0.589 0.826 −4.799 1.60 × 10−6
rs7419838 2 38894349 2p22.1 DHX57 intron A 0.117 0.883 0.766 −4.160 3.19 × 10−5
rs1997377 2 38805170 2P22.1 GALM intron T 0.111 0.889 0.750 −4.316 1.59 × 10−5
rs1562855 2 38861972 2p22.1 GEMIN6 intron C 0.142 0.858 0.781 −4.314 1.60 × 10−5
rs11917719 3 24186676 3p24.2 THRB intron T 0.157 0.843 0.796 −4.082 4.47 × 10−5
rs513130 5 72456095 5q13.2 TMEM171 intron T 0.405 0.595 0.838 −4.334 1.46 × 10−5
rs6457792 6 34872421 6p21.31 UHRF1BP1 intron G 0.097 0.097 1.305 4.293 1.76 × 10−5
rs10260451 7 142918347 7q35 EPHA1-AS1 intron A 0.177 0.823 0.799 −4.070 4.70 × 10−5
rs1643270 7 130826034 7q32.3 MKLN1 intron C 0.479 0.479 1.197 4.569 4.90 × 10−6
rs3800688 7 130843015 7q32.3 PODXL intron G 0.419 0.419 1.197 4.600 4.23 × 10−6
rs16927774 8 62771785 8q12.3 ASPH Intron C 0.213 0.787 0.820 −4.091 4.30 × 10−5
rs911782 10 123996033 10q26.13 TACC2 intron T 0.141 0.141 1.242 4.067 4.75 × 10−5
rs10466739 11 78290369 11q14.1 TENM4 intron C 0.198 0.198 1.221 4.286 1.82 × 10−5
rs11105368 12 88598572 12q21.33 ATP2B1 Intron C 0.376 0.624 0.810 −5.247 1.55 × 10−7
rs1378942 15 72864420 15q24.1 CSK Intron A 0.172 0.828 0.793 −4.380 1.19 × 10−5
rs3784789 15 72869605 15q24.1 CSK, MIR4513 Intron, upstream G 0.169 0.831 0.799 −4.167 3.08 × 10−5
rs11866964 16 48217182 16q12.1 ZNF423 intron A 0.231 0.769 0.826 −4.102 4.10 × 10−5
rs1858821 22 30006454 22q12.2 LIMK2 downstream T 0.145 0.855 0.788 −4.221 2.44 × 10−5
rs4141404 22 30005185 22q12.2 LIMK2 3′ UTR A 0.145 0.855 0.788 −4.221 2.44 × 10−5
rs2040533 22 30009110 22q12.2 PIK3IP1 missense, 3′ UTR G 0.146 0.854 0.788 −4.211 2.54 × 10−5
rs2413035 22 29930460 22q12.2 RNF185 intron T 0.149 0.851 0.791 −4.075 4.61 × 10−5

SNP, single nucleotide polymorphism; CHR, chromosome; MA, minor allele; MAF, minor allele frequency; RAF, risk allele frequency; OR, odds ratio; STAT, test statistic; UTR, untranslated region. 1 Odds ratios and p-values were calculated in multivariable logistic regression models, which were adjusted for age, sex, body mass index (BMI), and recruitment area.