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. 2017 Mar 30;12(3):e0174638. doi: 10.1371/journal.pone.0174638

Table 1. Information on the 31 bacterial species.

ID Organism Abbr. NCBI Accession ID Gram Essential Gene Number Sample Number
1 Acinetobacter baylyi ADP1 ABA NC_005966 - 498 3307
2 Bacillus subtilis 168 BSU NC_000964 + 271 4175
3 Bacteroides fragilis 638R BFR NC_016776 - 547 4290
4 Bacteroides thetaiotaomicron VPI-5482 BTH NC_004663 - 325 4778
5 Burkholderia pseudomallei K96243 BPS NC_006350/006351 - 505 5721
6 Burkholderia thailandensis E264 BUT NC_007650/007651 - 403 5631
7 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 CJE NC_002163 - 222 1572
8 Caulobacter crescentus CCR NC_011916 - 401 3182
9 Escherichia coli MG1655II ECO NC_000913 - 296 4140
10 Francisella novicida U112 FNO NC_008601 - 390 1719
11 Haemophilus influenzae Rd KW20 HIN NC_000907 - 625 1602
12 Helicobacter pylori 26695 HPY NC_000915 - 305 1457
13 Mycobacterium tuberculosis H37Rv MTU NC_000962 + 599 3872
14 Mycoplasma genitalium G37 MGE NC_000908 + 378 475
15 Mycoplasma pulmonis UAB CTIP MPU NC_002771 + 309 782
16 Porphyromonas gingivalis ATCC 33277 PGI NC_010729 - 463 2089
17 Pseudomonas aeruginosa PAO1 PAE NC_002516 - 116 5476
18 Pseudomonas aeruginosa UCBPP-PA14 PAU NC_008463 - 335 5892
19 Salmonella enterica serovar Typhi STY NC_004631 - 347 4195
20 Salmonella enterica serovar Typhimurium SL1344 STS NC_016810 - 353 4446
21 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S SET NC_016856 - 104 5233
22 Salmonella typhimurium LT2 SLT NC_003197 - 228 4363
23 Shewanella oneidensis MR-1 SON NC_004347 - 402 4065
24 Sphingomonas wittichii RW1 SWI NC_009511 - 535 4850
25 Staphylococcus aureus N315 SAU NC_002745 + 302 2582
26 Staphylococcus aureus NCTC 8325 SAN NC_007795 + 345 2751
27 Streptococcus pneumoniae SPN NC_003098 + 129 1793
28 Streptococcus pyogenes MGAS5448 SPM NC_007297 + 227 1865
29 Streptococcus pyogenes NZ131 SPZ NC_011375 + 241 1700
30 Streptococcus sanguinis SSA NC_009009 + 218 2270
31 Vibrio cholerae N16961 VCH NC_002505/002506 - 580 3351