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. 2017 Mar 30;12(3):e0174778. doi: 10.1371/journal.pone.0174778

Table 2. List of increased frequency of Single Nucleotide Variant (SNV) between TCGA GBM NB sample and 1000Genome1.

POS2 dbSNP REF3 ALT4 1000GenomesPhase3_Info (EUR_AF) No_mut # Mut5 # Total # Nucleotide change Amino acid change P value 95% CI6 (low) 95% CI (high)
26093236 rs1800758 G A 0.0994 184 77 261 c. 892+48G>A <0.0001 0.2404 0.3544
26094367 rs1572982 G A 0.4722 73 188 261 c. 1007-47G>A <0.0001 0.6616 0.7739
26091336 rs2071303 T C 0.3658 121 140 261 c. 340+4T>C <0.0001 0.4739 0.5981
26091179 rs1799945 C G 0.172 192 69 261 c. 187C>G His63Asp 0.0002 0.2119 0.3223
26087856 rs2858993 T A 0.3976 120 117 237 c. 76+112T>A 0.0028 0.4283 0.5592
26090381 rs62396165 C G 0.1074 37 12 49 c. 77-688C>G 0.0048 0.1334 0.3887
26088407 rs3799374 A G 0.1113 31 11 42 c. 76+663A>G 0.0052 0.1386 0.4204
26093141 rs1800562 G A 0.0427 241 20 261 c. 845G>A Cys282Tyr 0.0129 0.0474 0.1159
26093297 rs2794717 G A 0.007 256 5 261 c. 893-50G>A 0.0378 0.0062 0.0441

1 The studied samples were all Caucasians

2POS: Position

3REF: Reference

4ALT: Alternative

5Mut: Mutation

6CI: Confidence interval