Table 3. BAC clone sequence differences in comparison to EquCab2 assembly.
| BAC ID | No. of matched bp | No. of bp substi-tutions | No. of deleted bp (No. of events) | No. of inserted bp (No. of events) | Genetic distance* (%) | Per-base identity | Per-event identity |
|---|---|---|---|---|---|---|---|
| CH241-147K21 | 169,909 | 988 | 185 (78) | 343 (61) | 0.58 | 0.9912 | 0.9934 |
| CH241-455C07 | 170,359 | 1785 | 216 (118) | 214 (101) | 1.04 | 0.9872 | 0.9884 |
| CH241-135M23 | 190,848 | 230 | 58 (46) | 49 (44) | 0.12 | 0.9982 | 0.9983 |
| CH241-288J19 | 205,206 | 64 | 10 (10) | 16 (16) | 0.03 | 0.9996 | 0.9996 |
| CH241-440J07 | 212,692 | 1217 | 289 (127) | 190 (113) | 0.57 | 0.9921 | 0.9932 |
| CH241-359L18 | 193,810 | 599 | 344 (42) | 79 (45) | 0.31 | 0.9948 | 0.9965 |
| CH241-407K07 | 198,232 | 127 | 25 (23) | 24 (24) | 0.06 | 0.9991 | 0.9991 |
| CH241-441N13 | 168,231 | 598 | 410 (47) | 77 (44) | 0.35 | 0.9936 | 0.9959 |
Events – number of insertions or deletions; *p-distance (nucleotide).