Skip to main content
. 2017 Mar 14;18(Suppl 3):60. doi: 10.1186/s12859-017-1473-7

Table 6.

The AUC scores of the RF method for the prediction of hosts of viral contigs with different lengths using the models built from contigs of different lengths

Testing: 1 kb
Baci. Esch. Lact. Myco. Pseu. Salm. Stap. Syne. Virb.
Training: 1 kb 0.773 0.805 0.840 0.962 0.924 0.812 0.936 0.928 0.842
Training: 3 kb 0.819 0.857 0.833 0.977 0.959 0.818 0.955 0.960 0.858
Training: 5 kb 0.831 0.848 0.848 0.977 0.952 0.826 0.957 0.957 0.845
Training: wgs 0.821 0.718 0.818 0.886 0.833 0.792 0.948 0.890 0.774
Testing: 3 kb
Baci. Esch. Lact. Myco. Pseu. Salm. Stap. Syne. Virb.
Training: 1 kb 0.766 0.862 0.842 0.979 0.947 0.843 0.961 0.961 0.880
Training: 3 kb 0.823 0.878 0.868 0.980 0.975 0.866 0.966 0.967 0.898
Training: 5 kb 0.850 0.899 0.889 0.985 0.978 0.880 0.976 0.983 0.917
Training: wgs 0.854 0.827 0.885 0.967 0.952 0.872 0.976 0.951 0.876
Testing: 5 kb
Baci. Esch. Lact. Myco. Pseu. Salm. Stap. Syne. Virb.
Training: 1 kb 0.768 0.870 0.822 0.982 0.955 0.838 0.964 0.972 0.867
Training: 3 kb 0.827 0.900 0.869 0.985 0.977 0.871 0.974 0.986 0.904
Training: 5 kb 0.852 0.890 0.883 0.986 0.978 0.883 0.972 0.972 0.907
Training: wgs 0.858 0.865 0.888 0.983 0.970 0.882 0.979 0.965 0.900
Testing: wgs
Baci. Esch. Lact. Myco. Pseu. Salm. Stap. Syne. Virb.
Training: 1 kb 0.778 0.860 0.814 0.984 0.960 0.812 0.971 0.981 0.896
Training: 3 kb 0.854 0.901 0.817 0.994 0.988 0.884 0.989 0.994 0.930
Training: 5 kb 0.870 0.923 0.861 0.994 0.992 0.889 0.992 0.996 0.934
Training: wgs 0.862 0.859 1.0 0.985 0.979 0.893 0.987 0.981 0.938