Table 7.

Comparison of genome contents and population divergence of cod chromosome linkage groups 2, 7 and 12

Group	# SNPs	Block length (Mb)	SNP linked	# genes	Genes in LD	SNP density	proportion exonic SNPs	Fst in LD block	FST vs LD	FST outside LD block	Notes
LG02	43,341	5.6	33	1095	294	7.72E-03	0.089	0.098	negative	0.0025	discontinuous block
LG07	77,751	9.3	54	1166	306	8.36E-03	0.064	0.089	positive	0.0004
LG12	61,251	11.6	17	975	437	5.29E-03	0.071	0.173	higly positive	0.0022	marked lack of SNPs adjacent to linkage block
Not 2, 7, or 12	2,792,388	493.2