Table 2.
Basic characteristics of each SNP for Crohn’s disease (CD)
| Index | rs number | MAF | Chromosome (gene) | p-value (rank) | Index | rs number | MAF | Chromosome (gene) | p-value (rank) |
|---|---|---|---|---|---|---|---|---|---|
| 1 | rs11805303 | 0.347 | 1 (IL23R) | 4.41E-13 (2) | 16 | rs1456893 | 0.304 | 7 | 4.02E-05 (19) |
| 2 | rs12035082 | 0.410 | 1 | 2.70E-07 (8) | 17 | rs4263839 | 0.313 | 9 (NFSF15) | 1.64E-05 (17) |
| 3 | rs10801047 | 0.079 | 1 | 1.09E-05 (15) | 18 | rs17582416 | 0.363 | 10 (OC105376492) | 1.11E-03 (23) |
| 4 | rs11584383 | 0.297 | 1 (MROH3P) | 4.62E-05 (20) | 19 | rs10995271 | 0.413 | 10 | 1.54E-05 (16) |
| 5 | rs3828309 | 0.453 | 2 (ATG16L1) | 1.29E-13 (1) | 20 | rs10883365 | 0.498 | 10 (INC01475) | 1.60E-06 (11) |
| 6 | rs9858542 | 0.299 | 3 (BSN) | 3.20E-07 (9) | 21 | rs7927894 | 0.408 | 11 | 1.28E-02 (28) |
| 7 | rs17234657 | 0.146 | 5 | 1.71E-12 (3) | 22 | rs11175593 | 0.017 | 12 (OC105369735) | 4.22E-02 (30) |
| 8 | rs9292777 | 0.367 | 5 | 1.04E-11 (4) | 23 | rs3764147 | 0.222 | 13 (LACC1) | 3.34E-06 (13) |
| 9 | rs10077785 | 0.220 | 5 (C5orf56) | 6.39E-05 (22) | 24 | rs17221417 | 0.310 | 16 (NOD2) | 2.81E-10 (5) |
| 10 | rs13361189 | 0.084 | 5 | 7.04E-08 (6) | 25 | rs2872507 | 0.491 | 17 | 1.24E-03 (24) |
| 11 | rs4958847 | 0.130 | 5 (IRGM) | 1.81E-06 (12) | 26 | rs744166 | 0.422 | 17 (STAT3) | 6.27E-05 (21) |
| 12 | rs11747270 | 0.099 | 5 (IRGM) | 3.13E-05 (18) | 27 | rs2542151 | 0.181 | 18 | 1.74E-07 (7) |
| 13 | rs6887695 | 0.329 | 5 | 4.69E-03 (27) | 28 | rs1736135 | 0.412 | 21 (LOC101927745) | 3.39E-02 (29) |
| 14 | rs6908425 | 0.214 | 6 (CDKAL1) | 1.02E-06 (10) | 29 | rs2836754 | 0.374 | 21 (LOC400867) | 5.67E-06 (14) |
| 15 | rs7746082 | 0.293 | 6 | 4.20E-03 (26) | 30 | rs762421 | 0.408 | 21 (LOC105377139) | 2.35E-03 (25) |