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Overall GATK unfiltered alterations identified in HC and LC dataset (100 replicates of a dataset of 26 individuals and 11 genes)
| TV | FV | |
|---|---|---|
| HC dataset | ||
| Indels | 17,359 | 64,281 |
| SNVs | 89,743 | 1,372 |
| LC dataset | ||
| Indels | 7,656 | 80,489 |
| SNVs | 96,203 | 17,043 |
TV true variants, FV false variants
