Table 3.
Summary of methods employed in genome-wide polymorphism detection. Total number of loci, number of identified polymorphisms, detection efficiency and percentage genome coverage for each method (total loci sampled per 250 MB estimated genome size) were calculated for each method.
| TRAP | TRAPseq | SNParray | WGS | |
|---|---|---|---|---|
| Samples analyzed | Glory | Glory | Glory | Glory |
| Staccato | Staccato | Staccato | Staccato | |
| Sweetheart | Sweetheart | |||
| Bing | Bing | |||
| Kimberly | Kimberly | |||
| Total loci sampled | 45 | 24984 | 5696 | 1239693 |
| Polymorphic loci identified | 2 | 942 | 1385 | 2071 |
| Detection efficiency | 4.44% | 3.77% | 24.32% | 0.17% |
| % genome coverage Total loci sampled/250 MB (estimated genome size) |
0.00000018 | 0.009994 | 0.00002278 | 0.00495877 |