Table 4.
Genotypic features of MRSA CC398 isolates included in this study.
| Isolate ID | Species | spa type | SCCmec type | scn | chp | sak | sea | sep | IEC type | SNP 309-2 | Clade |
|---|---|---|---|---|---|---|---|---|---|---|---|
| H2 | Horse | t011 | IV(2B)a | + | + | + | − | − | B | + | H |
| H42 | Horse | t011 | IV(2B)a | + | + | + | − | − | B | + | H |
| H43 | Horse | t011 | IV(2B)a | + | + | + | − | − | B | + | H |
| H44 | Horse | t011 | IV(2B)a | + | + | + | − | − | B | + | H |
| H46 | Horse | t011 | IV(2B)a | + | + | + | − | − | B | + | H |
| H155 | Horse | t011 | IV(2B)a | + | + | + | − | − | B | + | H |
| H157 | Horse | t011 | IV(2B)a | + | + | + | − | − | B | + | H |
| H160 | Horse | t011 | IV(2B)a | + | + | + | − | − | B | + | H |
| H161 | Horse | t011 | IV(2B)a | + | + | + | − | − | B | + | H |
| H163 | Horse | t011 | IV(2B)a | + | + | + | − | − | B | + | H |
| Case D | Human | t011 | IV(2B)a | + | + | + | − | − | B | + | H |
| Case E | Human | t011 | IV(2B)a | + | + | + | − | − | B | + | H |
| Case I | Human | t011 | IV(2B)a | + | + | + | − | − | B | + | H |
| H223 | Horse | t034 | V(5C2&5)c | − | − | − | − | − | − | − | P1 |
| H224 | Horse | t034 | V(5C2&5)c | − | − | − | − | − | − | − | P1 |
| Case F | Human | t011 | V(5C2&5)c | + | + | + | + | − | A | − | P1 |
| Case H | Human | t011 | V(5C2&5)c | + | + | + | + | − | A | − | P1 |
| Case J | Human | t011 | V(5C2&5)c | + | + | + | - | − | B | − | P1 |
| Case K | Human | t011 | V(5C2&5)c | + | + | + | + | − | A | − | P1 |
| 55-100-009 | Pig | t034 | V(5C2&5)c | − | − | − | − | − | − | − | P1 |
| 55-100-067 | Pig | t011 | V(5C2&5)c | − | − | − | − | − | − | − | P1 |
| 55-100-079 | Pig | t034 | V(5C2&5)c | − | − | − | − | − | − | − | P1 |
| 55-100-124 | Pig | t034 | V(5C2&5)c | − | − | − | − | − | − | − | P1 |
| 55-100-133 | Pig | t034 | V(5C2&5)c | − | − | − | − | − | − | − | P1 |
| 55-100-016 | Pig | t011 | V(5C2&5)c | − | − | − | − | − | − | − | P2 |
| 55-100-026 | Pig | t011 | V(5C2&5)c | − | − | − | − | − | − | − | P2 |
| 55-100-056 | Pig | t011 | V(5C2&5)c | − | − | − | − | − | − | − | P2 |
| 55-100-080 | Pig | t034 | V(5C2&5)c | − | − | − | − | − | − | − | P2 |
| 55-100-132 | Pig | t011 | V(5C2&5)c | − | − | − | − | − | − | − | P2 |
| H280 | Horse | t034 | V(5C2)* | − | − | − | − | − | − | − | P3 |
| H285 | Horse | t034 | V(5C2)* | − | − | − | − | − | − | − | P3 |
| Case A | Human | t011 | V(5C2&5)c | + | + | + | − | − | B | − | P3 |
| Case B | Human | t011 | V(5C2&5)c | + | + | + | − | − | B | − | P3 |
| Case C | Human | t011 | V(5C2&5)c | + | + | + | − | − | B | − | P3 |
| Case G | Human | t011 | V(5C2)b | + | + | + | − | − | B | − | P3 |
| 55-100-042 | Pig | t034 | V(5C2&5)c | − | − | − | − | − | − | − | P3 |
| 55-100-073 | Pig | t034 | V(5C2&5)c | − | − | − | − | − | − | − | P3 |
| 55-100-081 | Pig | t011 | V(5C2&5)c | − | − | − | − | − | − | − | P3 |
| 55-100-087 | Pig | t034 | V(5C2&5)c | − | − | − | − | − | − | − | P3 |
| 55-100-096 | Pig | t034 | V(5C2&5)c | − | − | − | − | − | − | − | P3 |
| 55-100-137 | Pig | t034 | V(5C2&5)c | − | − | − | − | − | − | − | P3 |
All isolates were negative to vWbp Seq1, lukP, lukQ.
*
SCCmec subtype non-typeable.