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. 2017 Apr 3;18:61. doi: 10.1186/s13059-017-1181-7

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© The Author(s). 2017

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 2 — Enrichment of significant GEA archaic loci compared to non-archaic loci across all tissues. Each violin plot shows the distribution of the ratio between the number of significant archaic GEAs and 1000 samples of significant non-archaic GEAs for all archaic loci (blue), the subset of archaic loci with a Neandertal allele frequency <5% (dark blue), and the subset of archaic loci with a Neandertal allele frequency ≥5% (light blue)