TABLE 1.
Informative single nucleotide polymorphisms for BKV subtypes/subgroups on VP1 genomic positions (Dunlop-based numbering)
| VP1 position | SNP for BKV subtype or subgroup (no. of sequences): |
|||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Ia (14) | Ib-1 (44) | Ib-2 (76) | Ic (14) | II (11) | III (5) | IVa-1 (3) | IVa-2 (3) | IVb-1 (3) | IVb-2 (2) | IVc-1 (5) | IVc-2 (19) | |
| 1760 | T | T | T | T | A | A | A | A | A | A | A | A |
| 1761 | T | T | T | T | T | T | T | T | T | T | T | C |
| 1766, 1767, 1768 | TAA | TAA | TAA | TAA | TAA | AGC | TAA | TAA | TAA | TAA | TAA | TAA |
| 1770 | G | G | G | G | G | C | A | A | A | A | A | A |
| 1787 | A | A | A | A | C | C | C | C | C | C | C | C |
| 1824 | C | C | C | C | T | T | C | C | C | C | C | C |
| 1848 | C | C | C | C | A | A | A | A | A | A | A | A |
| 1857 | T | T | T | T | T | C | T | T | T | T | T | T |
| 1858 | T | T | T | T | C | C | T | T | T | T | T | T |
| 1860 | A | A | A | G | A | A | A | A | G | G | G | G |
| 1869 | C | C | C | C | C | C | T | T | T | T | T | T |
| 1912 | C | C | C | C | A | A | A | A | A | A | A | A |
| 1926 | T | T | T | T | T | T | T | T | T | G | T | T |
| 1938 | C | C | C | C | C | C | T | T | T | T | T | T |
| 1962 | A | A | A | A | C | C | A | A | A | A | A | A |
| 1965 | A | A | A | A | A | A | G | G | G | G | G | G |
| 1971 | G | G | G | A | T | T | A | A | A | A | A | A |
| 1977 | G | G | G | G | G | G | G | G | G | G | A | A |
| 1978 | C | C | C | C | A | A | A | A | A | A | A | A |
| 1989 | A | T | T | G | C | T | C | C | C | C | C | C |
| 1992 | A | A | A | G | A | A | A | A | A | A | A | A |
| 1998 | T | T | T | T | G or C | C | T | T | T | T | T | T |
| 2007 | T | T | T | T | T | T | C | C | C | C | C | C |
| 2013 | C | C | C | C | C | C | T | T | T | T | T | T |
| 2028 | T | T | T | T | G | G | G | G | G | G | G | G |
| 2034 | A | A | A | A | A | A | G | G | G | G | G | G |
| 2058 | G | G | G | G | G | G | G | C | A | A | A | A |
| 2067 | T | T | T | T | T | T | C | C | C | C | C | C |
| 2076 | A | C | A | A | A | A | A | A | A | A | A | A |
| 2086 | G | G | G | G | C | C | G | G | G | G | G | G |
| 2088 | T | T | A | A | A | A | A | A | A | A | A | A |
| 2100 | C | C | C | T | C | C | C | C | C | C | C | C |
| 2112 | A | A | A | A | T | T | C | C | C | C | C | C |
| 2142 | C | C | C | C | T | T | C | C | C | C | C | C |
| 2154 | T | T | T | T | T | T | C | C | C | C | C | C |
| 2181 | T | T | T | T | T | T | T | T | T | G | T | T |
| 2184 | G | G | G | G | G | G | A | A | A | A | A | A |
| 2191 | G | G | A | A | A | A | A | A | A | A | A | A |
| 2235 | T | T | T | T | T | T | A | A | A | A | A | A |
| 2237 | T | T | T | T | A | A | A | A | A | A | A | A |
| 2259 | C | C | C | C | C | T | C | C | C | C | C | C |
| 2274 | G | G | G | G | T | T | A | A | A | A | A | A |
| 2277 | C | C | C | C | C | C | C | C | T | C | C | C |
| 2280 | C | C | C | C | C | C | T | C | C | C | C | C |
| 2301 | A | A | A | A | G | G | G | G | G | G | G | G |
| 2316 | G | G | G | G | G | G | G | G | G | A | G | G |
| 2370 | C | C | C | C | G | G | A | A | A | A | A | A |
| 2391 | A | A | A | A | G | G | A | A | A | A | A | A |
| 2406 | A | A | A | A | A | A | G | G | G | G | G | G |
| 2413 | G | G | G | G | G | G | C | C | C | C | C | C |
| 2451 | A | A | A | A | G | G | A | A | A | A | A | A |
| 2457 | T | T | T | T | T | T | C | C | C | C | C | C |
| 2510 | G | G | G | G | A | A | G | G | G | G | G | G |
| 2541 | A | A | A | A | A | A | G | G | G | G | G | G |
| 2544 | C | C | C | C | T | T | T | T | T | T | T | T |
| 2550 | A | A | A | A | T | T | G | G | G | G | G | G |
| 2581 | A | A | A | A | C | C | C | C | A | C | C | C |
| 2583 | A | A | A | A | G | G | G | G | G | G | G | G |
| 2621 | A | A | A | A | G | G | G | G | G | G | G | G |
| 2625 | G | A | A | A | A | A | G | G | G | G | G | G |