Table 2. Comparison of full-genome lengths, ORF and aa identities of F46 with SARS and bat SARS-like CoVs.
| Virus strains | F46 | LYRa11 | Rs3367 | Rf1 | Cp | Rp3 | Tor2 | SZ3 |
|---|---|---|---|---|---|---|---|---|
| Origin | Rhinolophus pusillus | Rhinolophus affinis | Rhinolophus sinicus | Rhinolophus ferrumequinum | Chaerephon plicata | Rhinolophus pearsoni | SARS patient | Palm Civet |
| Genome (bases) | 29 722 | 29 805 | 29 792 | 29 709 | 29 452 | 29 736 | 29 751 | 29 741 |
| G+C (%) | 41.2 | 40.7 | 40.8 | 41.1 | 40.9 | 40.9 | 40.8 | 40.8 |
| ORF (length, aa/%aa identity) | ||||||||
| 1a | 4382 | 4382/98.5 | 4382/95.2 | 4377/93.1 | 4382/96.7 | 4380/94.1 | 4377/95.6 | 4382/95.7 |
| 1b | 2628 | 2628/99.1 | 2628/99.3 | 2626/98.4 | 2628/98.7 | 2626/99.2 | 2641/99.3 | 2628/99.3 |
| S | 1236 | 1259/77.7 | 1256/76.5 | 1241/81.0 | 1241/83.1 | 1241/83.5 | 1255/76.5 | 1255/76.3 |
| 3a | 274 | 274/82.1 | 274/87.9 | 274/89.4 | 274/94.1 | 274/88.3 | 274/86.8 | 274/86.4 |
| 3b | NP | NP/NA | 114/NA | 114/NA | NP/NA | NP/NA | 154/NA | 154/NA |
| E | 76 | 76/100 | 76/100 | 76/96.0 | 76/100 | 76/100 | 76/100 | 76/100 |
| M | 221 | 221/96.3 | 221/99.5 | 221/99.0 | 221/97.7 | 221/98.6 | 221/98.6 | 221/98.1 |
| 6 | 63 | 63/92.0 | 63/93.6 | 63/93.6 | 63/95.2 | 63/92.0 | 63/96.8 | 63/96.8 |
| 7a | 122 | 122/92.6 | 122/95.9 | 122/95.9 | 122/95.9 | 122/95.0 | 122/96.7 | 122/96.7 |
| 7b | 44 | 44/88.6 | 44/97.7 | 44/95.4 | 44/88.6 | 44/97.7 | 44/90.9 | 44/90.9 |
| 8a | 122 | NP | NP | 122/79.2 | NP | NP | 39/27.0 | 122/95.0 |
| 8b | NP | NP/NA | NP/NA | NP/NA | NP/NA | NP/NA | 84 | NP/NA |
| N | 422 | 422/98.8 | 422/98.5 | 421/95.2 | 422/98.5 | 421/97.6 | 422/98.5 | 422/98.5 |
| 9b | 98 | 98/95.9 | 98/97.9 | 97/83.6 | 98/94.8 | 97/87.7 | 98/97.9 | 98/97.9 |
Abbreviations: amino acid, aa; coronavirus, CoV; not available, NA; not present, NP; open reading frame, ORF; severe acute respiratory syndrome, SARS.