FIGURE 1.

Phylogenetic relationships of plant AFL gene family and the details of bryophyte. (A) ML unrooted tree of the plant AFL gene family comprising 264 sequences from 72 taxa (Table 1; for species names see Supplementary Table S2). (B) ML rooted tree of bryophyte AFL using green algae B3 sequences as outgroups (black). Numbers on the branches indicate bootstrap values calculated from 1,000 replicates. Only values higher than 50% are shown. (C) Domain structure of each clade and type, two clades divided into 10 types in total. (D) Amino acids (AAs) characteristic of the B1 and B2 domain. The sequence logo was generated using WebLogo (weblogo.berkeley.edu/).