Table 1.
Differential transcript analysis Hi-Seq
| Transcript Type | All Transcripts | Differential Transcripts (%) | FFPE (%) | FF (%) | |||
|---|---|---|---|---|---|---|---|
| rRNA | 44 | 42 | (95.5%) | 40 | (95.2%) | 2 | (4.8%) |
| Misc RNA | 437 | 412 | (94.3%) | 412 | (100.0%) | 0 | (0.0%) |
| snoRNA | 326 | 307 | (94.2%) | 306 | (99.7%) | 1 | (0.3%) |
| snRNA | 410 | 383 | (93.4%) | 383 | (100.0%) | 0 | (0.0%) |
| Sense intronic | 513 | 449 | (87.5%) | 448 | (99.8%) | 1 | (0.2%) |
| 3′ overlapping ncrna | 8 | 7 | (87.5%) | 7 | (100.0%) | 0 | (0.0%) |
| miRNA | 232 | 194 | (83.6%) | 192 | (99.0%) | 2 | (1.0%) |
| mt RNA | 10 | 7 | (70.0%) | 4 | (57.1%) | 3 | (42.9%) |
| Pseudogene | 3661 | 2504 | (68.4%) | 2348 | (93.8%) | 156 | (6.2%) |
| Antisense | 2881 | 1949 | (67.7%) | 1906 | (97.8%) | 43 | (2.2%) |
| Sense overlapping | 116 | 63 | (54.3%) | 63 | (100.0%) | 0 | (0.0%) |
| lincRNA | 1992 | 1041 | (52.3%) | 1009 | (96.9%) | 32 | (3.1%) |
| Processed transcript | 300 | 138 | (46.0%) | 129 | (93.5%) | 9 | (6.5%) |
| Polymorphic pseudogene | 17 | 7 | (41.2%) | 3 | (42.9%) | 4 | (57.1%) |
| Protein coding | 16,630 | 4450 | (26.8%) | 2112 | (47.5%) | 2338 | (52.5%) |
| Total | 27,577 | 11,953 | (43.3%) | 9362 | (78.3%) | 2591 | (21.7%) |