Table 2.
G6PD single nucleotide polymorphisms (SNPs) identified by Illumina sequencing
X Chromosome: nucleotide coordinatea | Ref SNP identifierb | Gene position | Coding DNA positionc | Nucleotide Variation (Ref/Alt) | Minor allele frequencyd | Codon number and variation |
---|---|---|---|---|---|---|
X:154546029 | Intron 2 | T/G | G = 0.021 | |||
X:154536313 | rs762515 | Intron 2 | T/C | C = 0.221 | ||
X:154536002 | rs1050828 | Exon 4 | 202 | C/T | T = 0.179 | 68 V/Me |
X:154535277 | rs1050829 | Exon 5 | 376 | T/C | C = 0.211 | 126 N/Df |
X:154534699 | rs73638302 | Intron 5 | G/A | A = 0.011 | ||
X:154534556 | rs2515904 | Intron 5 | G/C | C = 0.179 | ||
X:154534419 | rs5030868 | Exon 6 | 563 | G/A | A = 0.010 | 188S/Fg |
X:154533860 | rs2515905 | Intron 7 | G/A | A = 0.179 | ||
X:154533413 | rs5986990 | Intron 8 | G/A | A = 0.210 | 372Q/Q | |
X:154532738 | rs2230036 | Exon 10 | 1116 | C/T | A = 0.210 | 437Y/Y |
X:154532439 | rs2230037 | Exon 11 | 1311 | G/A | A = 0.242 | |
X:154532293 | rs2071429 | Intron 11 | A/G | G = 0.495 | ||
X:154532214 | rs77214077 | Exon 12 | 1431 | G/A | A = 0.010 | 477P/P |
X:154531643 | rs1050757 | 3′ UTR | T/C | C = 0.389 | ||
X:154530445 | rs12393550 | 3′ UTR | G/A | A = 0.221 | ||
X:154530400 | rs113098908 | 3′ UTR | G/A | A = 0.210 |
aChromosomal coordinates from GRCh38.p2 assembly of the human genome (December 2014)
bRefSNP accession ID (rs number) http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=5030872
cOriginally described cDNA positions are provided to facilitate comparisons across different manuscripts focused on G6PD polymorphisms
dMinor allele frequency among the 95 samples evaluated by Illumina sequencing
eAlso referenced as G6PD A- 202A
fAlso referenced as G6PD A 376G
gAlso referenced as G6PD Mediterranean 563T