Table 1.

Relevant genomic features and isolation source of the enterococcal species under study

Origin/feature	Organism	Genbanka accession Nº	Status	Sizeb (Mbp)	GC%	Genes (NCBI)	Proteins (NCBI)	CDS (RAST)	Source
Dairy isolates	Enterococcus durans IPLA 655	AOSM00000000.1	Contig	3.1	37.7	2941	2789	2978	Cheese
	E. hirae INF E1	JMIG00000000.1	Scaffold	2.8	36.8	2501	2404	2537	Cultured milk
	E. faecium CRL1879	AOUK00000000.1	Contig	2.9	37.7	2931	2616	3118	Artisanal cheese
	E. faecium E1604	AHXD00000000.1	Scaffold	2.9	38.3	2823	2749	2826	Cheese
	E. faecium NRRL B-2354	CP004063.1 (chromosome)	Complete	2.8	37.85	2771	2669	2837	Milk and dairy utensils
		CP004064.1 (plasmid)
	E. faecium UC7256	AWWM00000000.1	Contig	2.8	38.1	2699	2507	2878	Pannerone cheese
	E. faecium UC7267	ASAM00000000.1	Contig	2.7	37.9	2674	2549	2702	Fontina cheese
	E. faecium UC8668	AWWN00000000.1	Contig	2.9	38.1	2814	2667	2899	Cheese
	E. malodoratus ATCC 43197	ASWA00000000.1	Scaffold	4.6	39.9	4581	4499	4524	Gouda cheese
	E. mundtii ATCC 882	ASWC00000000.1	Scaffold	3.1	38.4	2986	2902	2915	Dairy products
	E. mundtii CRL1656	AFWZ00000000.1	Contig	3.1	38.4	2785	2651	2765	Stripping milk of an argentinean cow
	E. mundtii CRL35	JDFT00000000.1	Contig	2.9	38.3	2851	2757	2759	Artisanal cheese
Meat isolates	E. faecalis 2924	AIIV00000000.1	Scaffold	3.0	37.5	2835	2788	2819	Turkey meat
	E. faecalis 19116	AIIT00000000.1	Scaffold	3.0	37.3	2852	2797	2816	Pork meat
	E. faecium E1613	AHXE00000000.1	Scaffold	2.9	38.2	2881	2801	2849	Fish burguer
	E. faecium UC7251	ASAL00000000.1	Contig	2.7	37.9	2598	2480	2680	Fermented sausage
	E. faecium UC8733	AWWO00000000.1	Contig	2.7	37.9	2628	2491	2748	Fermented sausage
	E. faecium UC10237	AWWP00000000.1	Contig	2.6	37.9	2477	2390	2525	Llama sausage
Probiotics	E. faecium L-X	JRGY00000000.1	Contig	2.7	38.3	2641	2442	2728	Probiotic preparation
	E. faecalis Symbioflor 1	HF558530.1	Complete	2.8	37.7	2810	2705	2724	Stool specimen of a healthy human adult
	E. faecalis PC1.1	ADKN00000000.1	Contig	2.8	37.6	2661	2560	2612	Pooled fecal sample collected from healthy human
	E. faecium T-110	CP006030.1 (chromosome)	Complete	2.7	38.46	2639	2512	2653	Not specified
		CP006031.1 (plasmid)
	E. raffinosus CFTRI 2200	ATKJ00000000.2	Contig	4.2	39.4	4129	4016	4180	Infant fecal material
Dairy isolates and probiotics	E. faecium L-3	JRGX00000000.1	Scaffold	2.6	38.0	2559	2367	2646	Probiotic preparation
	E. faecalis MB5259	JMEC00000000.1	Contig	3.1	37.5	3051	2734	3180	Dairy origin

^aAll Accession numbers are from genbank.

^bGenomes sizes were calculated as the total length of contigs for each genome.