Table 1. DNA libraries and sequencing conditions.

Individuals	Libraries	Instruments	Num. of seq	Length (bp)	Total residues (bp)
WT-1	230-bp PE	HiSeq 2000	251,423,596	100	25,142,359,600
WT-2	230-bp PE	HiSeq 2000	247,609,546	100	24,760,954,600
WT-3	400-bp PE	GAIIx	84,857,156	101	8,570,572,756
	2-kb MP	HiSeq 2000	278,642,344	76	21,176,818,144
	5-kb MP	HiSeq 2000	244,796,700	76	18,604,549,200
DH-1	300-bp PE	HiSeq 2000	283,351,680	101	28,618,519,680
	500-bp PE	HiSeq 2000	253,179,572	101	25,571,136,772
	230-bp PE	HiSeq 2000	245,201,650	100	24,520,165,000
	2-kb MP	HiSeq 2000	248,467,078	101	25,095,174,878
	5-kb MP	HiSeq 2000	339,507,094	101	34,290,216,494
DH-2	230-bp PE	HiSeq 2000	236,267,482	100	23,626,748,200