Fig. 1.—

Circos plot depicting features of the new S. sclerotiorum assembly and positions of corresponding version one contigs. From outer to inner circular tracks: The 16 version two assembly (Ss1980 version 2) contigs colored to distinguish neighboring contigs; the contigs from the version one assembly (Ss1980 version 1) colored to distinguish neighboring contigs; circles depicting positions of secreted proteins and SsPEs—clear circles = secreted proteins, colored circles = SsPEs; log fold change in expression of secreted proteins from in vitro to each of the B. napus time points tested, from blue (downregulated) to red (upregulated); regions with a high RIP index as predicted by RipCal; repeat sequences from REPET de novo annotation of more than 5 kb. The lines crossing the center of the Circos plot join sequences of the same repeat element.